2XZO,2XZL,4B3F,4PJ3,5EAN,5MQF,5MZN


Conserved Protein Domain Family
SF1_C_Upf1

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cd18808: SF1_C_Upf1 
Click on image for an interactive view with Cn3D
C-terminal helicase domain of Upf1-like family helicases
The Upf1-like helicase family includes UPF1, HELZ, Mov10L1, Aquarius, IGHMBP2 (SMUBP2), and similar proteins. They are DEAD-like helicases belonging to superfamily (SF)1, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF2 helicases, SF1 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Statistics
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PSSM-Id: 350195
Aligned: 270 rows
Threshold Bit Score: 83.8228
Created: 31-Jan-2018
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ATP bindingDNA binding
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1:ATP binding site [chemical binding site]
Evidence:
  • Structure:2XZL; Saccharomyces cerevisiae Nam7 binds ADP/AlF4/Mg2+, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                      
2XZO_A     413 MHPALSAFPSNIFYegslqngvtaadrv-------kkgfdfqwpqpdkpMFFYVTQgqeeiassgtsylNRTEAANVEKI 485  human
2XZL_A     592 MNPYLSEFPSNMFYegslqngvtieqrt-------vpnskfpwpirgipMMFWANYgreeisangtsflNRIEAMNCERI 664  baker's yeast
NP_662505 1182 CVPPIIAYSNRTFYkgaiqplrip---------------kgseridpplVDVHVENgvrsr----ddsnREEASFIAEEI 1242 Chlorobium tepid...
ABA57432  1169 CMPEIIRFSNDLCYsdtpliplr-----------------qyssnrlppLEHVFVTggyceg-sknrtiNRPEANAIVTR 1230 Nitrosococcus oc...
ABI71103   612 SKPELIHFSNQSFYqsklkimqh------------------rpctssghLHLHRIAgtrd-----asgvNPQEAQSLLAE 668  Shewanella frigi...
ACJ33552  1006 MNEVLCRYPAKMIYgpqytafdkkiatqtlklnnestidewiqtiidpnYPLTVCVydgir----gtqeNEREAQWVAKI 1081 Anoxybacillus fl...
CBJ41110  1179 CVPPIIAYSNQFYKgaiqplripl----------------asqrldpplIDIHVPGgmrd-----rhdcNRLEAEAIVAE 1237 Ralstonia solana...
ADW02039  1171 CVPEIINWSSANFYdesllplrq------------------yggerldpLRVTYVEdaatig-reirihNPKEAEAIVDA 1231 Streptomyces fla...
EGB11582  1188 CVPQCIAFSNAQFYhdrllprrlp---------------prsqrltpalVDVKVPGgkkk------gktNEAEAAAVVAY 1246 Aureococcus anop...
ADZ22079  1046 CVPEIIGFSNMVSYsneiiplryp----------------kakeafsepVKVVKVKdglkd---nirqtNENEAKAIVNS 1106 Clostridium acet...
Feature 1                                                                              # #     
2XZO_A     486 TTKllkag-----------------akpdQIGIITPYEGQRs-YLVQYMQfsgslhtklyqeVEIASVDAFQGREKDFII 547  human
2XZL_A     665 ITKlfrdg-----------------vkpeQIGVITPYEGQRa-YILQYMQmngsldkdlyikVEVASVDAFQGREKDYII 726  baker's yeast
NP_662505 1243 AALlader-----------------fagrTIGVVSLLGMEQakYIDTLARkrcntaelfrrkFECGDARTFQGSERDIMF 1305 Chlorobium tepid...
ABA57432  1231 IAElckds----------------rydhkSMGVVVLQGEAQayLIENQLAkrlgpeemerrrLVCGNPYSFQGDERDIMF 1294 Nitrosococcus oc...
ABI71103   669 IQHqitqda--------------qtgithSIGIISPFSAQAe-YIATLIEqkipqtdvikhsIRAATPFGFQGEERDIML 733  Shewanella frigi...
ACJ33552  1082 TKVlrerllddngelyedntcgdkkfwnkGVFIISPHHAQIr-AIRRSLEnegl-----rpeFFVGTVDKMQGQEADVAI 1155 Anoxybacillus fl...
CBJ41110  1238 ISAiladd----------------ryagrTIGVVSLLGLEQakYIDTLVRercsasellrreFDCGDARTFQGSERDIMF 1301 Ralstonia solana...
ADW02039  1232 LERmteda----------------ayrdkTIGVIVLQGHGQtkYIEALIKqridpavrqrhrIQVGNAASFQGDERHVIL 1295 Streptomyces fla...
EGB11582  1247 LAAqlapgge-------------latrgaSVCVISLLGVEQarSIRRRALealtaaqlarhdVVVGDPASLQGDERDVVL 1313 Aureococcus anop...
ADZ22079  1107 IIEccsdt----------------kydnmTMGVISLLGEQQseLIESMLRhklgekemlkrkILCGDAFSFQGDERDIMF 1170 Clostridium acet...
Feature 1                                   #                                  
2XZO_A     548 LSCVRanehqg---igflndPRRLNVALTRARYGVIIVGNpkal------skqpLWNHLLNYYK 602  human
2XZL_A     727 LSCVRaneqqa---igflrdPRRLNVGLTRAKYGLVILGNprsl------arntLWNHLLIHFR 781  baker's yeast
NP_662505 1306 LSMVVdpgncka--lsgnmfEQRFNVAASRARDRMYLVRSvtashls-dldlrrSLLHHFDKPL 1366 Chlorobium tepidum TLS
ABA57432  1295 LSLVAaankrig-pltkaadERRFNVAASRARDKMILFHSvtfedls-asclrrRLLEFFANTQ 1356 Nitrosococcus oceani ATCC 19707
ABI71103   734 ISFAIdndskra--aaylnkADVFNVTITRARQKQLIYLSiddsllpehnllrqYVTSITTFNA 795  Shewanella frigidimarina NCIMB 400
ACJ33552  1156 ISYGVsdpelaimegefiysLNRLNVSLTRAKKKTIIFLSrqlm------spalQVISNDEYNE 1213 Anoxybacillus flavithermus WK1
CBJ41110  1302 LSMVAdperchp--lsgngpDQRFNVAASRARDRMYLVRSvtaehis-dkdirmTLLEHFSKPK 1362 Ralstonia solanacearum CMR15
ADW02039  1296 LSMVVtdppkia--ggaryeQQAYNVAASRAQDQMWLFHSvpidrlk-pndmrlNLITYMHNPP 1356 Streptomyces flavogriseus ATCC 3...
EGB11582  1314 LSLVAspkeapa--qvgrlyEQRFNVALSRARDRVVLFRSlelkdvpnaddlkhRTLAFFQRAA 1375 Aureococcus anophagefferens
ADZ22079  1171 LSLVVsngskis-altreadLRRFNVAASRARNQMWVFYSvdedklsdncvrtkFLRYCLDPAL 1233 Clostridium acetobutylicum EA 2018

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