4RS4,2GTH,2GTI,2H85,2OZK,5YVD,7K1L,7K1O


Conserved Protein Domain Family
NendoU_cv_Nsp15-like

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cd21161: NendoU_cv_Nsp15-like 
Click on image for an interactive view with Cn3D
Nidoviral uridylate-specific endoribonuclease (NendoU) domain of coronavirus Nonstructural Protein 15 (Nsp15) and related proteins
Nidovirus endoribonucleases (NendoUs) are uridylate-specific endoribonucleases, which release a cleavage product containing a 2',3'-cyclic phosphate at the 3' terminal end. NendoUs include Nsp15 from coronaviruses and Nsp11 from arteriviruses, both of which may participate in the viral replication process and in the evasion of the host immune system. Except for turkey coronavirus (TCoV) Nsp15, Mn2+ is generally essential for the catalytic activity of coronavirus Nsp15. Coronavirus Nsp15 from Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV), human Coronavirus 229E (HCoV229E), and murine hepatitis virus (MHV) form a functional hexamer while Porcine DeltaCoronavirus (PDCoV) Nsp15 has been shown to exist as a dimer and a monomer in solution. NendoUs are distantly related to Xenopus laevis Mn(2+)-dependent uridylate-specific endoribonuclease (XendoU) which is involved in the processing of intron-encoded box C/D U16 small, nucleolar RNA.
Statistics
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PSSM-Id: 439158
Aligned: 36 rows
Threshold Bit Score: 193.248
Created: 6-Feb-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
catalytic sitetrimerputative active
Conserved site includes 3 residues -Click on image for an interactive view with Cn3D
Feature 1: catalytic site [active site], 3 residue positions
Conserved feature residue pattern:H H KClick to see conserved feature residue pattern help
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                 #              #                        
4RS4_A        196 YTQGRNLqDFLPRSTMEEDFLNMDMGVFIQKYGLEdFNFEHVVYGDVSKtTLGGLHLSISQVRLSKmgiLKAEEFVAASd 275  Human coronav...
5YVD_A        191 YTQSRSCsDFLPLSDMEKDFLSFDSDVFIKKYGLEnYAFEHVVYGDFSHtTLGGLHLLIGLYKRQQeghIIMEEMLKGSs 270  Middle East r...
P12723         65 NTQGRSYeTFEPRSDVERDFLDMSEEDFVEKYGKD-LGLQHILYGEVDKpQLGGLHTVIGMYRLLRankLNAKSVTNSDs 143  Avian infecti...
P0C6Y2       6173 NTQGRSYeTFEPRSDIERDFLAMSEESFVERYGKD-LGLQHILYGEVDKpQLGGLHTVIGMYRLLRankLNAKSVTNSDs 6251 Avian infecti...
P0C6Y3       6175 NTQGRSYeTFEPRSDVERDFLDMSEESFVEKYGKE-LGLQHILYGEVDKpQLGGLHTVIGMCRLLRankLNAKSVTNSDs 6253 Avian infecti...
YP_005352862 5851 YSQQRSVvNFKPLTKMEADFLSMTQDQFIQTYDLTnLGVEHILYGDTSKtILGGCHALISLVHSEF---SSDFVTHLFN- 5926 Night heron c...
YP_001941164 6170 NTQGRSYeTFEPRSDVERDFLAMSEEDFVVKYGKG-LGLQHILYGEVDKpQLGGLHTVIGMYRLLRankLNAKSVTNSDs 6248 Turkey corona...
AKC54434     5840 CTQGRNVeQFIPKTPMERDFLEMSQQSFIQQYQLQeLGVEHIIYGDDSSpVIGGTHTLISLVKNKF---EHQLVNHVYN- 5915 Porcine delta...
AWV67133     5831 CTQGRNVeQFIPKTPMERDFLELSQDSFIEQYQLQdLGVEHIIYGEDSTpIIGGTHTLISLVKNKF---EYQLVNHVYN- 5906 Sparrow delta...
AWV96586     5840 CTQGRNVeQFIPKTPMERDFLEMSQQSFIQQYQLQdLGVEHIIYGDDSSpVLGGTHTLISLVKNKF---EQQLVNHVYN- 5915 Porcine delta...
Feature 1                         #                                                          
4RS4_A        276 iTLKCCTVTYLnDPSSKTvCTYMDLLLDDFVSVLKsLDLT---VVSKVHEVIIDNKPWRWMLWCkdnavATFYPQ 347  Human coronavirus ...
5YVD_A        271 -TIHNYFITETnTAAFKAvCSVIDLKLDDFVMILKsQDLG---VVSKVVKVPIDLTMIEFMLWCkdgqvQTFYPR 341  Middle East respir...
P12723        144 dVMQNYFVLAD-NGSYKQvCTVVDLLLDDFLELLRnILNEygtNKSKVVTVSIDYHSINFMTWFedgsiKTCYPQ 217  Avian infectious b...
P0C6Y2       6252 dVMQNYFVLSD-NGSYKQvCTVVDLLLDDFLELLRnILKEygtNKSKVVTVSIDYHSINFMTWFedgsiKTCYPQ 6325 Avian infectious b...
P0C6Y3       6254 dVMQNYFVLAD-NGSYKQvCTVVDLLLDDFLELLRnILKEygtNKSKVVTVSIDYHSINFMAWFedgiiKTCYPQ 6327 Avian infectious b...
YP_005352862 5927 -PVQNMIVTAD-NGSSKNvCSVVDLTIDNYIDIIR-QAHSvyeTKSKVFTVVIDNMPIKFTIWHdsqkvDTLYPL 5998 Night heron corona...
YP_001941164 6249 dVMQNYFVLAD-NGSYKQvCTVVDLLLDDFLELLRgILNEygtNKSKVVTVSIDYHSINFMTWFedgsiKTCYPQ 6322 Turkey coronavirus
AKC54434     5916 -PVQNCVVTSP-NASSKNvCTVLDVLLDDYIDIIRqAHASy-tSKSKVFTVSIDNQQIRFMLWHde-qvKTCYPI 5986 Porcine deltacoron...
AWV67133     5907 -PVQNCVVTSP-NASSKNvCTVLDVLLDDYIDIIR-QAHAnytTKSKVFTVSIDNQQIRFMLWHde-qvKTCYPI 5977 Sparrow deltacoron...
AWV96586     5916 -PVQNCFVTSP-NASSKNvCTVLDVLLDDYIDIIRqAHASy-tSKSKVFTVSIDNPQIRFMLWHde-qvKTCYPI 5986 Porcine deltacoron...

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