4S1T,2GTH,2GTI,2H85,2OZK,2RHB,4RS4,5YVD,6WLC


Conserved Protein Domain Family
M_alpha_beta_cv_Nsp15-like

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cd21167: M_alpha_beta_cv_Nsp15-like 
Click on image for an interactive view with Cn3D
middle domain of alpha- and beta-coronavirus Nonstructural protein 15 (Nsp15), and related proteins
Nidovirus endoribonucleases (NendoUs) are uridylate-specific endoribonucleases, which release a cleavage product containing a 2',3'-cyclic phosphate at the 3' terminal end. NendoUs include Nsp15 from coronaviruses and Nsp11 from arteriviruses, both of which may participate in the viral replication process and in the evasion of the host immune system. Coronavirus Nsp15 NendoUs have an N-terminal domain, a middle (M) domain and a C-terminal catalytic (NendoU) domain. Coronavirus Nsp15 from Severe Acute Respiratory Syndrome Coronavirus (SARS-CoV), human Coronavirus 229E (HCoV229E), and Murine Hepatitis Virus (MHV) form a functional hexamer. This middle domain harbors residues involved in hexamer formation and in trimer stability. Oligomerization of Porcine DeltaCoronavirus (PDCoV) Nsp15 differs from that of the other coronaviruses; it has been shown to exist as a dimer and a monomer in solution.
Statistics
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PSSM-Id: 439161
Aligned: 20 rows
Threshold Bit Score: 164.039
Created: 11-Feb-2020
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
 
trimerhexamer
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:trimer interface [polypeptide binding site]
Evidence:
  • Structure:2RHB: NTD of SARS CoV Nsp15-H234a mutant trimer interface, contacts at 4A
  • Comment:SARS CoV Nsp15 functions as a hexamer (dimer of trimers)
  • Structure:4RS4: NTD of human Coronavirus 229E trimer interface, contacts at 4A

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                  ##         # # # ###                                                
4S1T_A      66 LTPPLSILKNLGVVATYKFVLWDYeAERPLTSFTKSVCGYTDFAe--------dVCTCYDNSIQGSYERFTLSTNAVLFS 137  Human coronaviru...
2RHB_A      72 PVPEIKILNNLGVDIAANTVIWDYkREAPAHVSTIGVCTMTDIAkkptesacssLTVLFDGRVEGQVDLFRNARNGVLIT 151  Severe acute res...
4RS4_A      66 LTPPLSILKNLGVVATYKFVLWDYeAERPLTSFTKSVCGYTDFAe--------dVCTCYDNSIQGSYERFTLSTNAVLFS 137  Human coronaviru...
5YVD_A      65 SHPDFKLLHNLQADICYKFVLWDYeRSNIYGTATIGVCKYTDIDvn------saLNICFDIRDNCSLEKFMSTPNAIFIS 138  Middle East resp...
P0C6W0    6218 LTPPLTILKNLGVVCTSKCVLWDYeASRPLTTFTKDVCKYTDFDg--------dVCTLFDNSVPGAFERFTVTKNAVLIS 6289 Scotophilus bat ...
P0C6Y5    6110 LTPPLTILRNLGVVATYKFVLWDYeAERPFSNFTKQVCSYTDLDs--------eVVTCFDNSIAGSFERFTTTRDAVLIS 6181 Porcine transmis...
EYD93469    98 SHPDFKLLHNLQADICYKFVLWDYeRSNIYGTATIGVCKYTDIDvn------saLNICFDIRDNCSLEKFMSTPNAIFIS 171  Escherichia coli...
ASF90490  5753 FTPPLSLLRNLNVVRTDRFCLWDYdDNKPFTNYTSNFCLYTDFDf--------dVMTCYDNSISGSLERFRSASNAVLFS 5824 Wencheng Sm shre...
ATP66783  5813 LTPALCVLKNLGVNMLYKHTLWDYvAEMPFLNMTHGVCGYTDIDlh------dgMTVCYDNSVPGHYERFLGSKNAVLYS 5886 Shrew coronavirus
AWV67047  2018 VMPECKLLRNLGVTCTKDCVVWDHeRDAPLATSTINVCKYTDVDfkpl--klsnQVVLIDGRNPCAYSEFCVLDNAVYFS 2095 Bat coronavirus
Feature 1                           ## ####                                  
4S1T_A     138 ATAVKtggkSLPAIKL-NFGMLNGNAIATvksedgnikNINWFVYVRKDGKPVDHYDGFYTQ 198  Human coronavirus 229E
2RHB_A     152 EGSVK----GLTPSKGpAQASVNGVTLIGes------vKTQFNYFKKVDGIIQQLPETYFTQ 203  Severe acute respiratory syndrome-...
4RS4_A     138 ATAVKaggkSLPAIKL-NFGMLNGNAIATvksedgnikNINWFVYVRKDGKPVDHYDGFYTQ 198  Human coronavirus 229E
5YVD_A     139 DRKIK----KYPCMVGpDYAYFNGAIIRDsdv---vkqPVKFYLYKKVNNEFIDPTECIYTQ 193  Middle East respiratory syndrome-r...
P0C6W0    6290 LTAVK----KLTAIKL-TYGYLNGVPVFThe-----dkPFTWYIYTRKDGAFVEYPDGYFTQ 6341 Scotophilus bat coronavirus 512
P0C6Y5    6182 NNAVK----GLSAIKL-QYGLLNDLPVSTvg-----nkPVTWYIYVRKNGEYVEQIDSYYTQ 6233 Porcine transmissible gastroenteri...
EYD93469   172 DRKIK----KYPCMVGpDYAYFNGAIIRDsdv---vkqPVKFYLYKKVNNEFIDPTECIYTQ 226  Escherichia coli 1-176-05_S1_C1
ASF90490  5825 MTNIK----SLKGFSI-NYAYLNGKSVISsd-----gkDIKLYFYIREKGEYIENICSFFTQ 5876 Wencheng Sm shrew coronavirus
ATP66783  5887 TTRVK----KLHGFYV-PYGFFNGVYVRDgv------kDVGFYFYVKKNGVDVVLEDNYTTQ 5937 Shrew coronavirus
AWV67047  2096 VAKPK----CLSVRGP-PHASLNGAVVDApd------kGTQFWYAVRQNGSFVDLTDTFYTQ 2146 Bat coronavirus

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