|
Name |
Accession |
Description |
Interval |
E-value |
| SecA |
COG0653 |
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ... |
1-906 |
0e+00 |
|
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440418 [Multi-domain] Cd Length: 876 Bit Score: 1578.12 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 1 MLSILKKLFGTANDRTVKKLFSEITKINSLEPAIQKLSDEELKNKTVEFKEKLKNGATLDDIVYEAFAVVREAARRVCGM 80
Cdd:COG0653 1 MGKLLKKIFGSRNDRELKRLRKIVDKINALEPEMEALSDEELRAKTDEFKERLANGETLDDLLPEAFAVVREASKRVLGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 81 RHFDVQLIGGLILHRGMITEMRTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLASRDSASMGKIYNFLGLSVGCIVAGM 160
Cdd:COG0653 81 RHFDVQLIGGIVLHQGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGRLYRFLGLSVGVIVHGM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 161 PDEAKRAAYNADITHATNNELGFDYLRDNMKYSLQERVLRPFNFAIIDEVDSILIDEARTPLVISGPVNDNSELYGKIDK 240
Cdd:COG0653 161 DPEERRAAYAADITYGTNNEFGFDYLRDNMVFSLEDMVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSTDLYYRINK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 241 IVRMLN-TSDFEKDEKLKTINLTETGITHIESLLSKEhlikpdtGLYDFENLTLVHYVNQALRAHNMFTVDVDYLVREGK 319
Cdd:COG0653 241 LVPRLKrDGDYTVDEKARTVTLTEEGIEKVEKLLGID-------NLYDPENIELVHHLNQALRAHALFKRDVDYIVKDGE 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 320 VMIIDEFTGRVMEGRRYSEGLHQALEAKENVKIQNENQTLASITFQNYFRNYPKLSGMTGTAMTEAPELKDIYNLDVVAV 399
Cdd:COG0653 314 VVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYGLDVVVI 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 400 PTHNKVTRLDLDDEIYGSKKEKYDAILKLIKDCYDRGQPILVGTISIEKSEELSSVLNKEKIPHKVLNAKFHEQEAFIIA 479
Cdd:COG0653 394 PTNRPMIRKDEPDLVYKTEEEKFNAVVEDIKERHEKGQPVLVGTTSIEKSELLSKLLKKEGIPHNVLNAKQHEREAEIVA 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 480 QAGRFKAVTIATNMAGRGTDIMLGGNPEMLIEQLDEDHNYETKA--AEIKAQISEEKKQVIEAGGLFVIGTERHESRRID 557
Cdd:COG0653 474 QAGRPGAVTIATNMAGRGTDIVLGGNPEFLAAAELADRGLEWEEaiAKIKAEWQAEHEEVLEAGGLHVIGTERHESRRID 553
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 558 NQLRGRSGRQGDPGKTKFFLSLDDDLMRIFASDRISGVLRTLGLKDGEAIHHPMISRSLEKAQQKVEGHNYEMRKNLLRF 637
Cdd:COG0653 554 NQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRIKGMMDKLGMEEGEPIEHKMVSKAIENAQKKVEGRNFDIRKNLLEY 633
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 638 DDVMNDQRKIIYEQRTEIIKSKDSHGFLNSTTEELAKKIVLTFMPVGSYREDWDIENLSVELHRVFSMKFDHN-LVSKND 716
Cdd:COG0653 634 DDVMNDQRKVIYEQRREILEGEDLSETILDMREDVIEDLVDEYIPEGSYPEQWDLEGLEEALKELFGLDLPIEeWLDEEG 713
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 717 VTEEEITKIVIQTAHDIYKSKEEAYSSELMHNAVKYILLTTLDQVWKDHLYSLDHLRQGISLRAYAQKDPLSEYKREAFN 796
Cdd:COG0653 714 LDEEELRERLLEAADEAYEEKEEELGPEVMRELERVVLLQVLDRKWREHLDAMDHLRQGIGLRGYAQKDPLVEYKREAFE 793
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 797 LFEQMLNNLKELFIQTVYHFHIDlkhiQKEDVslehKKLQKNMRESREDPAfskynAGSSLETDLKPVVsrvdpkdrnpd 876
Cdd:COG0653 794 LFEEMLDSIKEEVVRYLFRVQVR----SEEER----EEVEEERRENHADPA-----GEEEEEAPKQPVR----------- 849
|
890 900 910
....*....|....*....|....*....|
gi 75536241 877 dptSWGRVSRNELCPCGSGKKYKYCHGANE 906
Cdd:COG0653 850 ---KGPKVGRNDPCPCGSGKKYKHCHGKLA 876
|
|
| PRK12904 |
PRK12904 |
preprotein translocase subunit SecA; Reviewed |
1-906 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237259 [Multi-domain] Cd Length: 830 Bit Score: 1543.50 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 1 MLSILKKLFGTANDRTVKKLFSEITKINSLEPAIQKLSDEELKNKTVEFKEKLKNGATLDDIVYEAFAVVREAARRVCGM 80
Cdd:PRK12904 1 MLGLLKKIFGSRNDRELKRLRKIVDKINALEPEMEKLSDEELKAKTAEFKERLAKGETLDDLLPEAFAVVREASKRVLGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 81 RHFDVQLIGGLILHRGMITEMRTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLASRDSASMGKIYNFLGLSVGCIVAGM 160
Cdd:PRK12904 81 RHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 161 PDEAKRAAYNADITHATNNELGFDYLRDNMKYSLQERVLRPFNFAIIDEVDSILIDEARTPLVISGPVNDNSELYGKIDK 240
Cdd:PRK12904 161 SPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 241 IVRMLN-TSDFEKDEKLKTINLTETGITHIESLLSKEhlikpdtGLYDFENLTLVHYVNQALRAHNMFTVDVDYLVREGK 319
Cdd:PRK12904 241 IVPTLEkEGDYTVDEKSRTVGLTEEGIEKAEKLLGIE-------NLYDPENIALVHHLNQALRAHELFKRDVDYIVKDGE 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 320 VMIIDEFTGRVMEGRRYSEGLHQALEAKENVKIQNENQTLASITFQNYFRNYPKLSGMTGTAMTEAPELKDIYNLDVVAV 399
Cdd:PRK12904 314 VVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVI 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 400 PTHNKVTRLDLDDEIYGSKKEKYDAILKLIKDCYDRGQPILVGTISIEKSEELSSVLNKEKIPHKVLNAKFHEQEAFIIA 479
Cdd:PRK12904 394 PTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAKNHEREAEIIA 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 480 QAGRFKAVTIATNMAGRGTDIMLGGNPEMLIEQLDEDHnYETKAAEIKAQISEEKKQVIEAGGLFVIGTERHESRRIDNQ 559
Cdd:PRK12904 474 QAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEE-TEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQ 552
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 560 LRGRSGRQGDPGKTKFFLSLDDDLMRIFASDRISGVLRTLGLKDGEAIHHPMISRSLEKAQQKVEGHNYEMRKNLLRFDD 639
Cdd:PRK12904 553 LRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRVKGMMDRLGMKEGEAIEHKMVTRAIENAQKKVEGRNFDIRKQLLEYDD 632
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 640 VMNDQRKIIYEQRTEIIKSKDSHGFLNSTTEELAKKIVLTFMPVGSYREDWDIENLSVELHRVFSMKFDHNLVSKNDVTE 719
Cdd:PRK12904 633 VMNDQRKVIYAQRNEILEGEDLSETILDMREDVIEDLVDAYIPPGSYEEDWDLEGLEEALKTDFGLELPIEEWLEEGLDE 712
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 720 EEITKIVIQTAHDIYKSKEEAYSSELMHNAVKYILLTTLDQVWKDHLYSLDHLRQGISLRAYAQKDPLSEYKREAFNLFE 799
Cdd:PRK12904 713 EELRERILEAAEEAYEEKEEELGEEQMREFERVVMLQVLDTKWREHLAAMDHLRQGIGLRGYAQKDPLQEYKREGFELFE 792
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 800 QMLNNLKELFIQTVYHFHIDlkhiqkedvslehkklqknmresredpafskynagssletdlkpvvsrvdpkdrnpddpt 879
Cdd:PRK12904 793 EMLDSIKEEVVRTLMKVQID------------------------------------------------------------ 812
|
890 900
....*....|....*....|....*..
gi 75536241 880 swgrvsrneLCPCGSGKKYKYCHGANE 906
Cdd:PRK12904 813 ---------PCPCGSGKKYKHCHGRLA 830
|
|
| secA |
TIGR00963 |
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are ... |
27-805 |
0e+00 |
|
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. This model excludes SecA2 of the accessory secretory system. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273366 [Multi-domain] Cd Length: 742 Bit Score: 1100.00 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 27 INSLEPAIQKLSDEELKNKTVEFKEKL-KNGATLDDIVYEAFAVVREAARRVCGMRHFDVQLIGGLILHRGMITEMRTGE 105
Cdd:TIGR00963 1 INALEEDYEKLSDEELRNKTNEFKDRLaKQGETLDDLLPEAFAVVREASKRVLGMRPFDVQLIGGIALHKGKIAEMKTGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 106 GKTLVATLPAYLNALTGKGVHVVTVNDYLASRDSASMGKIYNFLGLSVGCIVAGMPDEAKRAAYNADITHATNNELGFDY 185
Cdd:TIGR00963 81 GKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 186 LRDNMKYSLQERVLRPFNFAIIDEVDSILIDEARTPLVISGPVNDNSELYGKIDKIVRMLNTS-DFEKDEKLKTINLTET 264
Cdd:TIGR00963 161 LRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYVQANKFAKALEKEvDYEVDEKNRAVLLTEQ 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 265 GITHIESLLSKEHLikpdtglYDFENLTLVHYVNQALRAHNMFTVDVDYLVREGKVMIIDEFTGRVMEGRRYSEGLHQAL 344
Cdd:TIGR00963 241 GMKKAEDLLGVDNL-------YDLENSPLIHYINNALKAKELFQKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAI 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 345 EAKENVKIQNENQTLASITFQNYFRNYPKLSGMTGTAMTEAPELKDIYNLDVVAVPTHNKVTRLDLDDEIYGSKKEKYDA 424
Cdd:TIGR00963 314 EAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFRKIYNLEVVVVPTNRPVIRKDRPDLVYKTEEEKWKA 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 425 ILKLIKDCYDRGQPILVGTISIEKSEELSSVLNKEKIPHKVLNAKFHEQEAFIIAQAGRFKAVTIATNMAGRGTDIMLgg 504
Cdd:TIGR00963 394 VVEEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIATNMAGRGTDIKL-- 471
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 505 npemlieqldedhnyetkaaeikaqiseekKQVIEAGGLFVIGTERHESRRIDNQLRGRSGRQGDPGKTKFFLSLDDDLM 584
Cdd:TIGR00963 472 ------------------------------EEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLM 521
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 585 RIFASDRISGVLRTLGLKDGEAIHHPMISRSLEKAQQKVEGHNYEMRKNLLRFDDVMNDQRKIIYEQRTEIIKSKDSHGF 664
Cdd:TIGR00963 522 RIFGGDRLEGLMRRLGMDDDEPIESKMVSRALESAQKRVEGRNFDIRKQLLEYDDVLNKQREVIYAERRRVLESEDLSEL 601
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 665 LNSTTEELAKKIVLTFMPVGSYREDWDIENLSVELHRVFSMKFDHNLVSKNDVTEEEITKIVIQTAHDIYKSKEEAYSSE 744
Cdd:TIGR00963 602 ILQMLESTLDRIVDAYINEEKLSEEWDLEGLIEKLKTLFLLDGDLTPEDLENLTSEDLKELLLEKIRAAYDEKEEQLESE 681
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 75536241 745 LMHNAVKYILLTTLDQVWKDHLYSLDHLRQGISLRAYAQKDPLSEYKREAFNLFEQMLNNL 805
Cdd:TIGR00963 682 RMREFERYVLLQSIDRKWKEHLDAMDLLREGIGLRSYGQKDPLIEYKNEGFNLFEEMLEDI 742
|
|
| SecA_DEAD |
smart00957 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
5-389 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the.
Pssm-ID: 214937 [Multi-domain] Cd Length: 380 Bit Score: 736.93 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 5 LKKLFGTANDRTVKKLFSEITKINSLEPAIQKLSDEELKNKTVEFKEKLKNGATLDDIVYEAFAVVREAARRVCGMRHFD 84
Cdd:smart00957 1 LKKLFGSKNDRELKRLRKIVDQINALEPEMEALSDEELRAKTAEFKERLAEGESLDDLLPEAFAVVREAAKRVLGMRHFD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 85 VQLIGGLILHRGMITEMRTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLASRDSASMGKIYNFLGLSVGCIVAGMPDEA 164
Cdd:smart00957 81 VQLIGGIVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVIVSGMSPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 165 KRAAYNADITHATNNELGFDYLRDNMKYSLQERVLRPFNFAIIDEVDSILIDEARTPLVISGPVND-NSELYGKIDKIVR 243
Cdd:smart00957 161 RRAAYAADITYGTNNEFGFDYLRDNMAFSKEDKVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDeSSDLYHRADKFVP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 244 MLN-TSDFEKDEKLKTINLTETGITHIESLLSKEhlikpdtGLYDFENLTLVHYVNQALRAHNMFTVDVDYLVREGKVMI 322
Cdd:smart00957 241 RLKeDEDYTVDEKSRTVELTEEGIEKAEKLLGID-------NLYDPENIELLHHVNQALRAHYLFKRDVDYIVRDGEVVI 313
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 75536241 323 IDEFTGRVMEGRRYSEGLHQALEAKENVKIQNENQTLASITFQNYFRNYPKLSGMTGTAMTEAPELK 389
Cdd:smart00957 314 VDEFTGRVMEGRRYSDGLHQAIEAKEGVEIQEENQTLATITFQNYFRMYKKLSGMTGTAKTEAEEFR 380
|
|
| SecA_DEAD |
pfam07517 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
5-389 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Pssm-ID: 462190 [Multi-domain] Cd Length: 379 Bit Score: 689.23 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 5 LKKLFGTANDRTVKKLFSEITKINSLEPAIQKLSDEELKNKTVEFKEKLKNGATLDDIVYEAFAVVREAARRVCGMRHFD 84
Cdd:pfam07517 1 LKKIFGSPNERDLKRLRKIVDQINALEEELKALSDEELRAKTDELRERLREGESLDDILPEAFALVREAAKRVLGMRHYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 85 VQLIGGLILHRGMITEMRTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLASRDSASMGKIYNFLGLSVGCIVAGMPDEA 164
Cdd:pfam07517 81 VQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVITSDMDPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 165 KRAAYNADITHATNNELGFDYLRDNMKYSLQERVLRPFNFAIIDEVDSILIDEARTPLVISGPVNDNSELYGKIDKIVRM 244
Cdd:pfam07517 161 RRAAYNADITYGTNNELGFDYLRDNMATSKEDKVQRGLNFAIVDEVDSILIDEARTPLIISGPSEDDSELYREADRLVKS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 245 L-NTSDFEKDEKLKTINLTETGITHIESLLSKEHlikpdtgLYDFENLTLVHYVNQALRAHNMFTVDVDYLVREGKVMII 323
Cdd:pfam07517 241 LeEDGDYEIDEKSKNVELTEKGIEKIEKLLGIDN-------LYDPENVELLHHINQALKAHHLFKRDVDYIVRDGEVVIV 313
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 75536241 324 DEFTGRVMEGRRYSEGLHQALEAKENVKIQNENQTLASITFQNYFRNYPKLSGMTGTAMTEAPELK 389
Cdd:pfam07517 314 DEFTGRVMPGRRWSDGLHQAIEAKEGVEITPESQTLASITYQNFFRLYPKLSGMTGTAKTEAEEFR 379
|
|
| DEXDc_SecA |
cd17928 |
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the ... |
41-401 |
1.78e-135 |
|
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350686 [Multi-domain] Cd Length: 230 Bit Score: 403.84 E-value: 1.78e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 41 ELKNKTVEFKEKLKNGATLDDIVYEAFAVVREAARRVCGMRHFDVQLIGGLILHRGMITEMRTGEGKTLVATLPAYLNAL 120
Cdd:cd17928 1 ELRAKTDELRERLAKGETLDDLLPEAFALVREAARRVLGMRPFDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 121 TGKGVHVVTVNDYLASRDSASMGKIYNFLGLSVGCIVAGMPDEAKRAAYNADITHATNNELGFDYLRDNMKYSLQERVLR 200
Cdd:cd17928 81 TGKGVHVVTVNDYLARRDAEWMGPLYEFLGLTVGVILSDMSPDERREAYAADITYGTNNELGFDYLRDNMVTSKEDLVQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 201 PFNFAIIDEVDSILIDEARTPLVISGpvndnselygkidkivrmlntsdfekdeklktinltetgithiesllskehlik 280
Cdd:cd17928 161 GLNFAIVDEVDSILIDEARTPLIISG------------------------------------------------------ 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 281 pdtglydfenltlvhyvnqalrahnmftvdvdylvregkvmiideftgrvmegrryseglhqaleakenvkiqnenqTLA 360
Cdd:cd17928 187 -----------------------------------------------------------------------------TLA 189
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 75536241 361 SITFQNYFRNYPKLSGMTGTAMTEAPELKDIYNLDVVAVPT 401
Cdd:cd17928 190 TITFQNYFRLYPKLAGMTGTAKTEAEEFREIYNLDVVVIPT 230
|
|
| |
|
Name |
Accession |
Description |
Interval |
E-value |
| SecA |
COG0653 |
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, ... |
1-906 |
0e+00 |
|
Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport];
Pssm-ID: 440418 [Multi-domain] Cd Length: 876 Bit Score: 1578.12 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 1 MLSILKKLFGTANDRTVKKLFSEITKINSLEPAIQKLSDEELKNKTVEFKEKLKNGATLDDIVYEAFAVVREAARRVCGM 80
Cdd:COG0653 1 MGKLLKKIFGSRNDRELKRLRKIVDKINALEPEMEALSDEELRAKTDEFKERLANGETLDDLLPEAFAVVREASKRVLGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 81 RHFDVQLIGGLILHRGMITEMRTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLASRDSASMGKIYNFLGLSVGCIVAGM 160
Cdd:COG0653 81 RHFDVQLIGGIVLHQGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGRLYRFLGLSVGVIVHGM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 161 PDEAKRAAYNADITHATNNELGFDYLRDNMKYSLQERVLRPFNFAIIDEVDSILIDEARTPLVISGPVNDNSELYGKIDK 240
Cdd:COG0653 161 DPEERRAAYAADITYGTNNEFGFDYLRDNMVFSLEDMVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSTDLYYRINK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 241 IVRMLN-TSDFEKDEKLKTINLTETGITHIESLLSKEhlikpdtGLYDFENLTLVHYVNQALRAHNMFTVDVDYLVREGK 319
Cdd:COG0653 241 LVPRLKrDGDYTVDEKARTVTLTEEGIEKVEKLLGID-------NLYDPENIELVHHLNQALRAHALFKRDVDYIVKDGE 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 320 VMIIDEFTGRVMEGRRYSEGLHQALEAKENVKIQNENQTLASITFQNYFRNYPKLSGMTGTAMTEAPELKDIYNLDVVAV 399
Cdd:COG0653 314 VVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYGLDVVVI 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 400 PTHNKVTRLDLDDEIYGSKKEKYDAILKLIKDCYDRGQPILVGTISIEKSEELSSVLNKEKIPHKVLNAKFHEQEAFIIA 479
Cdd:COG0653 394 PTNRPMIRKDEPDLVYKTEEEKFNAVVEDIKERHEKGQPVLVGTTSIEKSELLSKLLKKEGIPHNVLNAKQHEREAEIVA 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 480 QAGRFKAVTIATNMAGRGTDIMLGGNPEMLIEQLDEDHNYETKA--AEIKAQISEEKKQVIEAGGLFVIGTERHESRRID 557
Cdd:COG0653 474 QAGRPGAVTIATNMAGRGTDIVLGGNPEFLAAAELADRGLEWEEaiAKIKAEWQAEHEEVLEAGGLHVIGTERHESRRID 553
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 558 NQLRGRSGRQGDPGKTKFFLSLDDDLMRIFASDRISGVLRTLGLKDGEAIHHPMISRSLEKAQQKVEGHNYEMRKNLLRF 637
Cdd:COG0653 554 NQLRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRIKGMMDKLGMEEGEPIEHKMVSKAIENAQKKVEGRNFDIRKNLLEY 633
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 638 DDVMNDQRKIIYEQRTEIIKSKDSHGFLNSTTEELAKKIVLTFMPVGSYREDWDIENLSVELHRVFSMKFDHN-LVSKND 716
Cdd:COG0653 634 DDVMNDQRKVIYEQRREILEGEDLSETILDMREDVIEDLVDEYIPEGSYPEQWDLEGLEEALKELFGLDLPIEeWLDEEG 713
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 717 VTEEEITKIVIQTAHDIYKSKEEAYSSELMHNAVKYILLTTLDQVWKDHLYSLDHLRQGISLRAYAQKDPLSEYKREAFN 796
Cdd:COG0653 714 LDEEELRERLLEAADEAYEEKEEELGPEVMRELERVVLLQVLDRKWREHLDAMDHLRQGIGLRGYAQKDPLVEYKREAFE 793
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 797 LFEQMLNNLKELFIQTVYHFHIDlkhiQKEDVslehKKLQKNMRESREDPAfskynAGSSLETDLKPVVsrvdpkdrnpd 876
Cdd:COG0653 794 LFEEMLDSIKEEVVRYLFRVQVR----SEEER----EEVEEERRENHADPA-----GEEEEEAPKQPVR----------- 849
|
890 900 910
....*....|....*....|....*....|
gi 75536241 877 dptSWGRVSRNELCPCGSGKKYKYCHGANE 906
Cdd:COG0653 850 ---KGPKVGRNDPCPCGSGKKYKHCHGKLA 876
|
|
| PRK12904 |
PRK12904 |
preprotein translocase subunit SecA; Reviewed |
1-906 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237259 [Multi-domain] Cd Length: 830 Bit Score: 1543.50 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 1 MLSILKKLFGTANDRTVKKLFSEITKINSLEPAIQKLSDEELKNKTVEFKEKLKNGATLDDIVYEAFAVVREAARRVCGM 80
Cdd:PRK12904 1 MLGLLKKIFGSRNDRELKRLRKIVDKINALEPEMEKLSDEELKAKTAEFKERLAKGETLDDLLPEAFAVVREASKRVLGM 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 81 RHFDVQLIGGLILHRGMITEMRTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLASRDSASMGKIYNFLGLSVGCIVAGM 160
Cdd:PRK12904 81 RHFDVQLIGGMVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGM 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 161 PDEAKRAAYNADITHATNNELGFDYLRDNMKYSLQERVLRPFNFAIIDEVDSILIDEARTPLVISGPVNDNSELYGKIDK 240
Cdd:PRK12904 161 SPEERREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANK 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 241 IVRMLN-TSDFEKDEKLKTINLTETGITHIESLLSKEhlikpdtGLYDFENLTLVHYVNQALRAHNMFTVDVDYLVREGK 319
Cdd:PRK12904 241 IVPTLEkEGDYTVDEKSRTVGLTEEGIEKAEKLLGIE-------NLYDPENIALVHHLNQALRAHELFKRDVDYIVKDGE 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 320 VMIIDEFTGRVMEGRRYSEGLHQALEAKENVKIQNENQTLASITFQNYFRNYPKLSGMTGTAMTEAPELKDIYNLDVVAV 399
Cdd:PRK12904 314 VVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVI 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 400 PTHNKVTRLDLDDEIYGSKKEKYDAILKLIKDCYDRGQPILVGTISIEKSEELSSVLNKEKIPHKVLNAKFHEQEAFIIA 479
Cdd:PRK12904 394 PTNRPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAKNHEREAEIIA 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 480 QAGRFKAVTIATNMAGRGTDIMLGGNPEMLIEQLDEDHnYETKAAEIKAQISEEKKQVIEAGGLFVIGTERHESRRIDNQ 559
Cdd:PRK12904 474 QAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEE-TEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQ 552
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 560 LRGRSGRQGDPGKTKFFLSLDDDLMRIFASDRISGVLRTLGLKDGEAIHHPMISRSLEKAQQKVEGHNYEMRKNLLRFDD 639
Cdd:PRK12904 553 LRGRSGRQGDPGSSRFYLSLEDDLMRIFGSDRVKGMMDRLGMKEGEAIEHKMVTRAIENAQKKVEGRNFDIRKQLLEYDD 632
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 640 VMNDQRKIIYEQRTEIIKSKDSHGFLNSTTEELAKKIVLTFMPVGSYREDWDIENLSVELHRVFSMKFDHNLVSKNDVTE 719
Cdd:PRK12904 633 VMNDQRKVIYAQRNEILEGEDLSETILDMREDVIEDLVDAYIPPGSYEEDWDLEGLEEALKTDFGLELPIEEWLEEGLDE 712
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 720 EEITKIVIQTAHDIYKSKEEAYSSELMHNAVKYILLTTLDQVWKDHLYSLDHLRQGISLRAYAQKDPLSEYKREAFNLFE 799
Cdd:PRK12904 713 EELRERILEAAEEAYEEKEEELGEEQMREFERVVMLQVLDTKWREHLAAMDHLRQGIGLRGYAQKDPLQEYKREGFELFE 792
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 800 QMLNNLKELFIQTVYHFHIDlkhiqkedvslehkklqknmresredpafskynagssletdlkpvvsrvdpkdrnpddpt 879
Cdd:PRK12904 793 EMLDSIKEEVVRTLMKVQID------------------------------------------------------------ 812
|
890 900
....*....|....*....|....*..
gi 75536241 880 swgrvsrneLCPCGSGKKYKYCHGANE 906
Cdd:PRK12904 813 ---------PCPCGSGKKYKHCHGRLA 830
|
|
| secA |
TIGR00963 |
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are ... |
27-805 |
0e+00 |
|
preprotein translocase, SecA subunit; The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. This model excludes SecA2 of the accessory secretory system. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 273366 [Multi-domain] Cd Length: 742 Bit Score: 1100.00 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 27 INSLEPAIQKLSDEELKNKTVEFKEKL-KNGATLDDIVYEAFAVVREAARRVCGMRHFDVQLIGGLILHRGMITEMRTGE 105
Cdd:TIGR00963 1 INALEEDYEKLSDEELRNKTNEFKDRLaKQGETLDDLLPEAFAVVREASKRVLGMRPFDVQLIGGIALHKGKIAEMKTGE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 106 GKTLVATLPAYLNALTGKGVHVVTVNDYLASRDSASMGKIYNFLGLSVGCIVAGMPDEAKRAAYNADITHATNNELGFDY 185
Cdd:TIGR00963 81 GKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVGLILSGMSPEERREAYACDITYGTNNELGFDY 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 186 LRDNMKYSLQERVLRPFNFAIIDEVDSILIDEARTPLVISGPVNDNSELYGKIDKIVRMLNTS-DFEKDEKLKTINLTET 264
Cdd:TIGR00963 161 LRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTELYVQANKFAKALEKEvDYEVDEKNRAVLLTEQ 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 265 GITHIESLLSKEHLikpdtglYDFENLTLVHYVNQALRAHNMFTVDVDYLVREGKVMIIDEFTGRVMEGRRYSEGLHQAL 344
Cdd:TIGR00963 241 GMKKAEDLLGVDNL-------YDLENSPLIHYINNALKAKELFQKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAI 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 345 EAKENVKIQNENQTLASITFQNYFRNYPKLSGMTGTAMTEAPELKDIYNLDVVAVPTHNKVTRLDLDDEIYGSKKEKYDA 424
Cdd:TIGR00963 314 EAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFRKIYNLEVVVVPTNRPVIRKDRPDLVYKTEEEKWKA 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 425 ILKLIKDCYDRGQPILVGTISIEKSEELSSVLNKEKIPHKVLNAKFHEQEAFIIAQAGRFKAVTIATNMAGRGTDIMLgg 504
Cdd:TIGR00963 394 VVEEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAKNHEREAEIIAQAGRKGAVTIATNMAGRGTDIKL-- 471
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 505 npemlieqldedhnyetkaaeikaqiseekKQVIEAGGLFVIGTERHESRRIDNQLRGRSGRQGDPGKTKFFLSLDDDLM 584
Cdd:TIGR00963 472 ------------------------------EEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLEDNLM 521
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 585 RIFASDRISGVLRTLGLKDGEAIHHPMISRSLEKAQQKVEGHNYEMRKNLLRFDDVMNDQRKIIYEQRTEIIKSKDSHGF 664
Cdd:TIGR00963 522 RIFGGDRLEGLMRRLGMDDDEPIESKMVSRALESAQKRVEGRNFDIRKQLLEYDDVLNKQREVIYAERRRVLESEDLSEL 601
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 665 LNSTTEELAKKIVLTFMPVGSYREDWDIENLSVELHRVFSMKFDHNLVSKNDVTEEEITKIVIQTAHDIYKSKEEAYSSE 744
Cdd:TIGR00963 602 ILQMLESTLDRIVDAYINEEKLSEEWDLEGLIEKLKTLFLLDGDLTPEDLENLTSEDLKELLLEKIRAAYDEKEEQLESE 681
|
730 740 750 760 770 780
....*....|....*....|....*....|....*....|....*....|....*....|.
gi 75536241 745 LMHNAVKYILLTTLDQVWKDHLYSLDHLRQGISLRAYAQKDPLSEYKREAFNLFEQMLNNL 805
Cdd:TIGR00963 682 RMREFERYVLLQSIDRKWKEHLDAMDLLREGIGLRSYGQKDPLIEYKNEGFNLFEEMLEDI 742
|
|
| secA |
PRK12906 |
preprotein translocase subunit SecA; Reviewed |
1-806 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237260 [Multi-domain] Cd Length: 796 Bit Score: 1068.18 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 1 MLSILKKLFGTaNDRTVKKLFSEITKINSLEPAIQKLSDEELKNKTVEFKEKLKNGATLDDIVYEAFAVVREAARRVCGM 80
Cdd:PRK12906 1 MANILKKWFDN-DKRELKRLEKIADKVNALEDEYEKLSDEQLQAKTPEFRDRIKDGESLDDLLPEAFAVAREGAKRVLGL 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 81 RHFDVQLIGGLILHRGMITEMRTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLASRDSASMGKIYNFLGLSVGCIVAGM 160
Cdd:PRK12906 80 RPFDVQIIGGIVLHEGNIAEMKTGEGKTLTATLPVYLNALTGKGVHVVTVNEYLSSRDATEMGELYRWLGLTVGLNLNSM 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 161 PDEAKRAAYNADITHATNNELGFDYLRDNMKYSLQERVLRPFNFAIIDEVDSILIDEARTPLVISGPVNDNSELYGKIDK 240
Cdd:PRK12906 160 SPDEKRAAYNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQAEKATDLYIRADR 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 241 IVRML------------NTSDFEKDEKLKTINLTETGITHIESLLSKEHLikpdtglYDFENLTLVHYVNQALRAHNMFT 308
Cdd:PRK12906 240 FVKTLikdeaedgdddeDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNL-------YDSENTALAHHIDQALRANYIML 312
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 309 VDVDYLVREGKVMIIDEFTGRVMEGRRYSEGLHQALEAKENVKIQNENQTLASITFQNYFRNYPKLSGMTGTAMTEAPEL 388
Cdd:PRK12906 313 KDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAKTEEEEF 392
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 389 KDIYNLDVVAVPTHNKVTRLDLDDEIYGSKKEKYDAILKLIKDCYDRGQPILVGTISIEKSEELSSVLNKEKIPHKVLNA 468
Cdd:PRK12906 393 REIYNMEVITIPTNRPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNA 472
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 469 KFHEQEAFIIAQAGRFKAVTIATNMAGRGTDIMLGGNpemlieqldedhnyetkaaeikaqiseekkqVIEAGGLFVIGT 548
Cdd:PRK12906 473 KNHAKEAEIIMNAGQRGAVTIATNMAGRGTDIKLGPG-------------------------------VKELGGLAVIGT 521
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 549 ERHESRRIDNQLRGRSGRQGDPGKTKFFLSLDDDLMRIFASDRISGVLRTLGL-KDGEAIHHPMISRSLEKAQQKVEGHN 627
Cdd:PRK12906 522 ERHESRRIDNQLRGRSGRQGDPGSSRFYLSLEDDLMRRFGSDRVKAFLDRLGMnDDDQVIESRMITRQVESAQKRVEGNN 601
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 628 YEMRKNLLRFDDVMNDQRKIIYEQRTEIIKS-KDSHGFLNSTTEELAKKIVLTFMPvgSYREDWDIENL--SVELHRVFS 704
Cdd:PRK12906 602 YDTRKQLLQYDDVMREQREVIYKQRMQVINEdKDLKEVLMPMIKRTVDRQVQMYTQ--GDKKDWDLDALrdFIVSAMPDE 679
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 705 MKFDhnLVSKNDVTEEEITKIVIQTAHDIYKSKEEA-YSSELMHNAVKYILLTTLDQVWKDHLYSLDHLRQGISLRAYAQ 783
Cdd:PRK12906 680 ETFD--FEDLKGKSPEELKKRLLDIVEDNYAEKEKQlGDPTQMLEFEKVVILRVVDSHWTDHIDAMDQLRQSIGLRGYGQ 757
|
810 820
....*....|....*....|...
gi 75536241 784 KDPLSEYKREAFNLFEQMLNNLK 806
Cdd:PRK12906 758 LNPLVEYQEEGYRMFEEMISNID 780
|
|
| PRK09200 |
PRK09200 |
preprotein translocase subunit SecA; Reviewed |
4-827 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 236408 [Multi-domain] Cd Length: 790 Bit Score: 937.43 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 4 ILKKLFGTANDRTVKKLFSEITKINSLEPAIQKLSDEELKNKTVEFKEKLKNGATLDDIVYEAFAVVREAARRVCGMRHF 83
Cdd:PRK09200 1 MKKKLLGDIDKRRLKKYRKIVKQINKLEGKMSSLSDEELRQKTIEFKERLASGKTLDDILPEAFAVVREAAKRVLGMRPY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 84 DVQLIGGLILHRGMITEMRTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLASRDSASMGKIYNFLGLSVGCIVAGMPDE 163
Cdd:PRK09200 81 DVQLIGALVLHEGNIAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGLNFSDIDDA 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 164 A-KRAAYNADITHATNNELGFDYLRDNMKYSLQERVLRPFNFAIIDEVDSILIDEARTPLVISGPVNDNSELYGKIDKIV 242
Cdd:PRK09200 161 SeKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSNLYHIAAKFV 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 243 RML-NTSDFEKDEKLKTINLTETGITHIESLLSKEHLikpdtglYDFENLTLVHYVNQALRAHNMFTVDVDYLVREGKVM 321
Cdd:PRK09200 241 KTLeEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNL-------YSLEHQVLYRHIILALRAHVLFKRDVDYIVYDGEIV 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 322 IIDEFTGRVMEGRRYSEGLHQALEAKENVKIQNENQTLASITFQNYFRNYPKLSGMTGTAMTEAPELKDIYNLDVVAVPT 401
Cdd:PRK09200 314 LVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNMEVVQIPT 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 402 HNKVTRLDLDDEIYGSKKEKYDAILKLIKDCYDRGQPILVGTISIEKSEELSSVLNKEKIPHKVLNAKFHEQEAFIIAQA 481
Cdd:PRK09200 394 NRPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAAKEAQIIAEA 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 482 GRFKAVTIATNMAGRGTDIMLGgnpemlieqldedhnyetkaaeikaqiseekKQVIEAGGLFVIGTERHESRRIDNQLR 561
Cdd:PRK09200 474 GQKGAVTVATNMAGRGTDIKLG-------------------------------EGVHELGGLAVIGTERMESRRVDLQLR 522
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 562 GRSGRQGDPGKTKFFLSLDDDLMRIFASDRI---SGVLRTLGLKDGEAIHHPMISRSLEKAQQKVEGHNYEMRKNLLRFD 638
Cdd:PRK09200 523 GRSGRQGDPGSSQFFISLEDDLLKRFAPEELeklKKKLKTDAQRLTGLLFNRKVHKIVVKAQRISEGAGYSAREYALELD 602
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 639 DVMNDQRKIIYEQRTEIIKSKDSHGF------LNSTTEELAKKIVLTfmpvGSYREDWDIENLSVELHRVFS-MKFDHnl 711
Cdd:PRK09200 603 DVINIQRDVVYKERNRLLEEDDRDLIdivilmIDVYLEAVAEEYLLE----KSLLEEWIYENLSFQLNEILSnTNFPD-- 676
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 712 vskndvtEEEITKIVIQTAHDIYKSK-EEAYSSELMHNAVKYILLTTLDQVWKDHLYSLDHLRQGISLRAYAQKDPLSEY 790
Cdd:PRK09200 677 -------KKEVVQFLLEEAEKQLKEKrNKLPSATLYNQFLRKVALKAIDQNWVEQVDALQQLKEGIGLRQYGQRNPIREY 749
|
810 820 830
....*....|....*....|....*....|....*..
gi 75536241 791 KREAFNLFEQMLNNLKElfiQTVYHFHIDLKHIQKED 827
Cdd:PRK09200 750 QKEALESFEYMYENIKK---DMVRNLLLSLLVFDKEG 783
|
|
| SecA2_Bac_anthr |
TIGR04397 |
accessory Sec system translocase SecA2, Bacillus type; Members of this family always occur in ... |
5-805 |
0e+00 |
|
accessory Sec system translocase SecA2, Bacillus type; Members of this family always occur in genomes with the preprotein translocase SecA (TIGR00963) and closely resemble it, hence the designation SecA2. However, this appears to mark a different type of accessory Sec system SecA2 (TIGR03714) from the serine-rich glycoprotein type found in Staphylococcus and Streptococcus, and the actinobacterial SecA2 (TIGR04221). This type occurs in species including Bacillus anthracis, Geobacillus thermoglucosidasius, Solibacillus silvestris, etc. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 275190 [Multi-domain] Cd Length: 774 Bit Score: 919.90 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 5 LKKLFGTANDRTVKKLFSEITKINSLEPAIQKLSDEELKNKTVEFKEKLKNGATLDDIVYEAFAVVREAARRVCGMRHFD 84
Cdd:TIGR04397 1 VKKLKGDSSARELKRYEKLVAQINELEPKMEKLSDEELRQKTITFKERLEDGKTVDDIKVEAFAVVREASKRVLGMRHYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 85 VQLIGGLILHRGMITEMRTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLASRDSASMGKIYNFLGLSVGCIVAGMPDEA 164
Cdd:TIGR04397 81 VQLIGGLVLLEGNIAEMPTGEGKTLVASLPSYLRALEGKGVHVITVNDYLARRDRELIGQIHEFLGLTVGLNVPMMEASE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 165 KRAAYNADITHATNNELGFDYLRDNMKYSLQERVLRPFNFAIIDEVDSILIDEARTPLVISGPVNDNSELYGKIDKIVRM 244
Cdd:TIGR04397 161 KKEAYQADITYGVGTEFGFDYLRDNMVYSLSDKVQRPYHFAIIDEIDSVLIDEAKTPLIIAGKTGSSSELHYICARIIKS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 245 L-NTSDFEKDEKLKTINLTETGITHIESLLSKEHLikpdtglYDFENLTLVHYVNQALRAHNMFTVDVDYLVREGKVMII 323
Cdd:TIGR04397 241 FeETEDYEYDPETKAASLTEEGITKIERAFGIDNL-------YDLEHQTLYHYLIQALRAHVLFKRDVDYIVKDGKIELV 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 324 DEFTGRVMEGRRYSEGLHQALEAKENVKIQNENQTLASITFQNYFRNYPKLSGMTGTAMTEAPELKDIYNLDVVAVPTHN 403
Cdd:TIGR04397 314 DMFTGRIMEGRSLSDGLHQAIEAKEGLEITEENKTQASITIQNYFRMYPKLSGMTGTAKTEEKEFRETYGMDVVQIPTNR 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 404 KVTRLDLDDEIYGSKKEKYDAILKLIKDCYDRGQPILVGTISIEKSEELSSVLNKEKIPHKVLNAKFHEQEAFIIAQAGR 483
Cdd:TIGR04397 394 PRIRVDWPDRVFMTYEAKYKAVAKEVKKRHETGQPILIGTTSILQSETVAKYLDKEKIPYQLLNAKTVEQEADLIALAGQ 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 484 FKAVTIATNMAGRGTDIMLGgnpemlieqldedhnyetkaaeikaqiseekKQVIEAGGLFVIGTERHESRRIDNQLRGR 563
Cdd:TIGR04397 474 KGQVTIATNMAGRGTDILLG-------------------------------EGVHELGGLHVIGTERHESRRIDNQLRGR 522
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 564 SGRQGDPGKTKFFLSLDDDLMRIFASDRISGVLRTLGLKDGEAIHHPMISRSLEKAQQKVEGHNYEMRKNLLRFDDVMND 643
Cdd:TIGR04397 523 SGRQGDPGSSQFIISLEDDMFRRYAAEELEKWKKKLKTDETGEILNKDVHEFVDKVQRIIEGSHYSAREYNLKLDDVINE 602
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 644 QRKIIYEQRTEIIKSKDSHGFLNSTTEELAKKIVLTFMPVGSYREDWDIENLSVELHRVFSMKFdhNLVSKNDVTEEEIT 723
Cdd:TIGR04397 603 QRNVIYQLRDKLLEEEDAISEVLKMIRSAVEQIIDQYCPEEVLPEEWDLERLTEELNRIFPVTF--VTFDKRIADKEELK 680
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 724 KIVIQTAHDIYKSKEEAYSSELMHNAVKYILLTTLDQVWKDHLYSLDHLRQGISLRAYAQKDPLSEYKREAFNLFEQMLN 803
Cdd:TIGR04397 681 DLVKDTYEQYIAALEKLPENEEIQMRLKHVMLSVIDAHWTRHLDAMNLLKEGIGLRSYQQEDPMRLYQKEGLELFEAMYQ 760
|
..
gi 75536241 804 NL 805
Cdd:TIGR04397 761 NI 762
|
|
| secA |
CHL00122 |
preprotein translocase subunit SecA; Validated |
5-815 |
0e+00 |
|
preprotein translocase subunit SecA; Validated
Pssm-ID: 214371 [Multi-domain] Cd Length: 870 Bit Score: 919.77 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 5 LKKLFGtaNDRTVKKLFSEITKINSLEPAIQKLSDEELKNKTVEFKEKLKNGATLDDIVYEAFAVVREAARRVCGMRHFD 84
Cdd:CHL00122 2 FNNLFN--NKSKLNKYQTLVNQINLLEEELKNLTDTELRSKTNKLKKRLSNGQNLNKIIPESFALTREASFRTLGLRHFD 79
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 85 VQLIGGLILHRGMITEMRTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLASRDSASMGKIYNFLGLSVGCIVAGMPDEA 164
Cdd:CHL00122 80 VQLIGGLVLNDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQEGMSSEE 159
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 165 KRAAYNADITHATNNELGFDYLRDNMKYSLQERVLRPFNFAIIDEVDSILIDEARTPLVISGPVNDNSELYGKIDKIVRM 244
Cdd:CHL00122 160 RKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQSKTNIDKYIVADELAKY 239
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 245 L-NTSDFEKDEKLKTINLTETGITHIESLLSKEHlikpdtgLYDFENlTLVHYVNQALRAHNMFTVDVDYLVREGKVMII 323
Cdd:CHL00122 240 LeKNVHYEVDEKNKNVILTEQGILFIEKILKIED-------LYSAND-PWIPYILNALKAKELFFKNVHYIVRNNEIIIV 311
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 324 DEFTGRVMEGRRYSEGLHQALEAKENVKIQNENQTLASITFQNYFRNYPKLSGMTGTAMTEAPELKDIYNLDVVAVPTHN 403
Cdd:CHL00122 312 DEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLEVVCIPTHR 391
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 404 KVTRLDLDDEIYGSKKEKYDAILKLIKDCYDRGQPILVGTISIEKSEELSSVLNKEKIPHKVLNAK----FHEQEafIIA 479
Cdd:CHL00122 392 PMLRKDLPDLIYKDELSKWRAIADECLQMHQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKpenvRRESE--IVA 469
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 480 QAGRFKAVTIATNMAGRGTDIMLGGNPEMLI-----------------------------------EQLD-EDHNYETKA 523
Cdd:CHL00122 470 QAGRKGSITIATNMAGRGTDIILGGNPEFKLkkelydlllsyksnekistisqnflnilnslkndlKFLSlSDFENLKIL 549
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 524 AEI-------------------------KAQISEEKKQVIEAGGLFVIGTERHESRRIDNQLRGRSGRQGDPGKTKFFLS 578
Cdd:CHL00122 550 NEAseisipknsyqlslrflynellekyKKLQEKEKKIVKKLGGLYVIGTERHESRRIDNQLRGRAGRQGDPGSSRFFLS 629
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 579 LDDDLMRIFASDRISGVLRTLGLKDgEAIHHPMISRSLEKAQQKVEGHNYEMRKNLLRFDDVMNDQRKIIYEQRTEIIKS 658
Cdd:CHL00122 630 LEDNLLRIFGGDKIQNLMQTLNLDD-EPLESKLLSKSLDSAQKKVEEYYYDQRKQLFEYDQVLNKQRKAIYSERRKILES 708
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 659 KDSHGFLNSTTEELAKKIVLTFMPVGSYREdwDIENLSVELHRVFSMKFDHNLVSKNDVTEEEITKIVIQ---TAHDIYK 735
Cdd:CHL00122 709 QSLRDWILAYGEQVIDDIITFLKSRKNPNN--KFINLINKFKELLKLPLCFNKSDLNTLNSGELKKFLYQqfwISYDLKE 786
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 736 SKEEAYSSELMHNAVKYILLTTLDQVWKDHLYSLDHLRQGISLRAYAQKDPLSEYKREAFNLFEQMLNNLKELFIQTVYH 815
Cdd:CHL00122 787 LYLEQIGTGLMRELERSLLLQQIDKSWKEHLQKMSLLREAIGWRSYGQKDPLIEYKNEAFNLFINMINHIRHLVIYDLFR 866
|
|
| secA |
PRK12901 |
preprotein translocase subunit SecA; Reviewed |
1-905 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237256 [Multi-domain] Cd Length: 1112 Bit Score: 889.75 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 1 MLSILKKLFGTANDRTVKKLFSEITKINSLEPAIQKLSDEELKNKTVEFKEKLKNGA----------------------- 57
Cdd:PRK12901 1 MNEFLKKLFGDKSERDLKEIQPIVEKIKAEYPELEALSNDELRAKTDEFKQYIKEAVadidakieelkaeaiesldider 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 58 --------------------TLDDIVYEAFAVVREAARRVCG-------------------------------------- 79
Cdd:PRK12901 81 ediyaqidklekeayeilekVLDEILPEAFAIVKETARRFAEneeievtatdfdrelaatkdfvtiegdkaiwknhwdag 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 80 -------MRHFDVQLIGGLILHRGMITEMRTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLASRDSASMGKIYNFLGLS 152
Cdd:PRK12901 161 gneitwdMVHYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 153 VGCIVAGMPD-EAKRAAYNADITHATNNELGFDYLRDNMKYSLQERVLRPFNFAIIDEVDSILIDEARTPLVISGPVNDN 231
Cdd:PRK12901 241 VDCIDKHQPNsEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVLIDDARTPLIISGPVPKG 320
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 232 S-----ELYGKIDKIVR------------------------------------------------------MLNTSD--- 249
Cdd:PRK12901 321 DdqefeELKPRVERLVEaqrklatqflaeakkliaegdkkegglallrayrglpknkalikflseegikalLQKTENfym 400
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 250 ---------------FEKDEKLKTINLTETGITHIESLL-SKEHLIKPDTG--LYDFENLTL------------------ 293
Cdd:PRK12901 401 qdnnrempevdeelyFVIDEKNNSVELTDKGIDYITGNDeDPDFFVLPDIGteLAEIENEGGldeeeeaekkeelfqdys 480
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 294 -----VHYVNQALRAHNMFTVDVDYLVREGKVMIIDEFTGRVMEGRRYSEGLHQALEAKENVKIQNENQTLASITFQNYF 368
Cdd:PRK12901 481 vkserVHTLNQLLKAYTLFEKDDEYVVMDGKVKIVDEQTGRIMEGRRYSDGLHQAIEAKENVKIEAATQTFATITLQNYF 560
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 369 RNYPKLSGMTGTAMTEAPELKDIYNLDVVAVPTHNKVTRLDLDDEIYGSKKEKYDAILKLIKDCYDRGQPILVGTISIEK 448
Cdd:PRK12901 561 RMYHKLAGMTGTAETEAGEFWDIYKLDVVVIPTNRPIARKDKEDLVYKTKREKYNAVIEEITELSEAGRPVLVGTTSVEI 640
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 449 SEELSSVLNKEKIPHKVLNAKFHEQEAFIIAQAGRFKAVTIATNMAGRGTDIMLGgnpemlieqldedhnyetkaAEIKA 528
Cdd:PRK12901 641 SELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQPGTVTIATNMAGRGTDIKLS--------------------PEVKA 700
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 529 qiseekkqvieAGGLFVIGTERHESRRIDNQLRGRSGRQGDPGKTKFFLSLDDDLMRIFASDRISGVLRTLGLKDGEAIH 608
Cdd:PRK12901 701 -----------AGGLAIIGTERHESRRVDRQLRGRAGRQGDPGSSQFYVSLEDNLMRLFGSERIAKVMDRMGLKEGEVIQ 769
|
810 820 830 840 850 860 870 880
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 609 HPMISRSLEKAQQKVEGHNYEMRKNLLRFDDVMNDQRKIIYEQRTEIIKSKDSHGFLNSTTEELAKKIVLTfmpvgsYRE 688
Cdd:PRK12901 770 HSMISKSIERAQKKVEENNFGIRKRLLEYDDVMNSQREVIYKRRRHALMGERLGMDIANMIYDVCEAIVEN------NKV 843
|
890 900 910 920 930 940 950 960
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 689 DWDIENLSVELHRVFSMKFDHNLVSKNDVTEEEITKIVIQTAHDIYKSK------------------------------- 737
Cdd:PRK12901 844 ANDYKGFKFELIRTLAMESPITEEEFNKLKKDELTDKLYDAALENYQRKmeriaeiafpvikqvyeeqgnmyerivvpft 923
|
970 980 990 1000 1010 1020 1030 1040
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 738 ------------EEAYSSE---LMHNAVKYILLTTLDQVWKDHLYSLDHLRQGISLRAYAQKDPLSEYKREAFNLFEQML 802
Cdd:PRK12901 924 dgkrtlnvvtnlKEAYETEgkeIVKDFEKNITLHIIDEAWKEHLREMDELKQSVQNASYEQKDPLLIYKFESFELFKNMV 1003
|
1050 1060 1070 1080 1090 1100 1110 1120
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 803 NNLKELFIQTVYHFHIDLKHIQKEDVSLEHKKLQKNMRESREDPAFSKYNAGSSLET--DLKPVVSRVDPKdrnpddpts 880
Cdd:PRK12901 1004 DKVNREVISFLFKGEIPVQEAPEIREAAPERRLDPKYRTQKEEIQDSDQRAAASRDTgaQVKETPVRVEKK--------- 1074
|
1130 1140 1150
....*....|....*....|....*....|
gi 75536241 881 wgrVSRNELCPC-----GSGKKYKYCHGAN 905
Cdd:PRK12901 1075 ---IGRNDPVPCqnvdgGSGKKYKFKHAEN 1101
|
|
| secA |
PRK12903 |
preprotein translocase subunit SecA; Reviewed |
5-804 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237258 [Multi-domain] Cd Length: 925 Bit Score: 881.31 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 5 LKKLFGTanDRTVKKLFSEITK-INSLEPAIQKLSDEELKNKTVEFKEKLKNGATLDDIVYEAFAVVREAARRVCGMRHF 83
Cdd:PRK12903 3 FLKLFFF--KSTEMRIAEKILKqINDLEPYYRNLTDEELANKTNEFKDRLKNGETLEDIRVEAFAVAREATKRVLGKRPY 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 84 DVQLIGGLILHRGMITEMRTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLASRDSASMGKIYNFLGLSVGCIVAGMPDE 163
Cdd:PRK12903 81 DVQIIGGIILDLGSVAEMKTGEGKTITSIAPVYLNALTGKGVIVSTVNEYLAERDAEEMGKVFNFLGLSVGINKANMDPN 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 164 AKRAAYNADITHATNNELGFDYLRDNMKYSLQERVLRPFNFAIIDEVDSILIDEARTPLVISGPVNDNSELYGKIDKIVR 243
Cdd:PRK12903 161 LKREAYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGGQSNDSNLYLAADQFVR 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 244 MLNTSDFEKDEKLKTINLTETGITHIESLLSKEHlikpdtgLYDFENLTLVHYVNQALRAHNMFTVDVDYLVREGKVMII 323
Cdd:PRK12903 241 TLKEDDYKIDEETKAISLTEKGIKKANKFFKLKN-------LYDIENSELVHRIQNALRAHKVMKEDVEYIVRDGKIELV 313
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 324 DEFTGRVMEGRRYSEGLHQALEAKENVKIQNENQTLASITFQNYFRNYPKLSGMTGTAMTEAPELKDIYNLDVVAVPTHN 403
Cdd:PRK12903 314 DQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNMRVNVVPTNK 393
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 404 KVTRLDLDDEIYGSKKEKYDAILKLIKDCYDRGQPILVGTISIEKSEELSSVLNKEKIPHKVLNAKFHEQEAFIIAQAGR 483
Cdd:PRK12903 394 PVIRKDEPDSIFGTKHAKWKAVVKEVKRVHKKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQNAREAEIIAKAGQ 473
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 484 FKAVTIATNMAGRGTDIMLGgnpemlieqldedhnyetkaaeikaqiseekKQVIEAGGLFVIGTERHESRRIDNQLRGR 563
Cdd:PRK12903 474 KGAITIATNMAGRGTDIKLS-------------------------------KEVLELGGLYVLGTDKAESRRIDNQLRGR 522
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 564 SGRQGDPGKTKFFLSLDDDLMRIFAS-DRISGVLRTLGlkdGEAIHHPMISRSLEKAQQKVEGHNYEMRKNLLRFDDVMN 642
Cdd:PRK12903 523 SGRQGDVGESRFFISLDDQLFRRFSNfDKIKEAFKKLG---DDEIKSKFFSKALLNAQKKIEGFNFDTRKNVLDYDDVIR 599
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 643 DQRKIIYEQRTEIIKSKDSHGFLNSTTEELAKKIVLTFMPVGSYREdWDIENLSVELHRVFSMKFDHNLVSK--NDVTEE 720
Cdd:PRK12903 600 QQRDLIYAQRDLILIADDLSHVIEKMISRAVEQILKNSFIILKNNT-INYKELVEFLNDNLLRITHFKFSEKdfENYHKE 678
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 721 EITKIVIQTAHDIYKSKE----EAYSSELMHNAVKYILLTTLDQVWKDHLYSLDHLRQGISLRAYAQKDPLSEYKREAFN 796
Cdd:PRK12903 679 ELAQYLIEALNEIYFKKRqvilDKIALNTFFESERYIILSALDKYWQNHIDTMDKLRSGVNLVQYSQKNPYQVYTEEGTK 758
|
....*...
gi 75536241 797 LFEQMLNN 804
Cdd:PRK12903 759 KFNILLQE 766
|
|
| SecA_DEAD |
smart00957 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
5-389 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the.
Pssm-ID: 214937 [Multi-domain] Cd Length: 380 Bit Score: 736.93 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 5 LKKLFGTANDRTVKKLFSEITKINSLEPAIQKLSDEELKNKTVEFKEKLKNGATLDDIVYEAFAVVREAARRVCGMRHFD 84
Cdd:smart00957 1 LKKLFGSKNDRELKRLRKIVDQINALEPEMEALSDEELRAKTAEFKERLAEGESLDDLLPEAFAVVREAAKRVLGMRHFD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 85 VQLIGGLILHRGMITEMRTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLASRDSASMGKIYNFLGLSVGCIVAGMPDEA 164
Cdd:smart00957 81 VQLIGGIVLHEGKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVIVSGMSPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 165 KRAAYNADITHATNNELGFDYLRDNMKYSLQERVLRPFNFAIIDEVDSILIDEARTPLVISGPVND-NSELYGKIDKIVR 243
Cdd:smart00957 161 RRAAYAADITYGTNNEFGFDYLRDNMAFSKEDKVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDeSSDLYHRADKFVP 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 244 MLN-TSDFEKDEKLKTINLTETGITHIESLLSKEhlikpdtGLYDFENLTLVHYVNQALRAHNMFTVDVDYLVREGKVMI 322
Cdd:smart00957 241 RLKeDEDYTVDEKSRTVELTEEGIEKAEKLLGID-------NLYDPENIELLHHVNQALRAHYLFKRDVDYIVRDGEVVI 313
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 75536241 323 IDEFTGRVMEGRRYSEGLHQALEAKENVKIQNENQTLASITFQNYFRNYPKLSGMTGTAMTEAPELK 389
Cdd:smart00957 314 VDEFTGRVMEGRRYSDGLHQAIEAKEGVEIQEENQTLATITFQNYFRMYKKLSGMTGTAKTEAEEFR 380
|
|
| secA2 |
TIGR03714 |
accessory Sec system translocase SecA2; Members of this protein family are homologous to SecA ... |
13-806 |
0e+00 |
|
accessory Sec system translocase SecA2; Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. [Protein fate, Protein and peptide secretion and trafficking]
Pssm-ID: 163426 [Multi-domain] Cd Length: 762 Bit Score: 716.43 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 13 NDRTVKKLFSEITKINSLEPAIQKLSDEELKNKTVEFKEKLKNGATLDDIVYEAFAVVREAARRVCGMRHFDVQLIGGLI 92
Cdd:TIGR03714 2 NNLRLKKLRKILNKINALKGKMATLSDEELQAKTAEFKNRLVEGESLDDILPEAYAVVREADKRVLGMFPYDVQVLGAIV 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 93 LHRGMITEMRTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLASRDSASMGKIYNFLGLSVGCIVAGMPDE-----AKRA 167
Cdd:TIGR03714 82 LHQGNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVSLGVVDDPDEeydanEKRK 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 168 AYNADITHATNNELGFDYLRDNMKYSLQERVLRPFNFAIIDEVDSILIDEARTPLVISGPVNDNSELYGKIDKIVRMLNT 247
Cdd:TIGR03714 162 IYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYHIADTFVRTLKE 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 248 S-DFEKDEKLKTINLTETGITHIESLLSKEHLIKPdtglydfENLTLVHYVNQALRAHNMFTVDVDYLVREGKVMIIDEF 326
Cdd:TIGR03714 242 DvDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSE-------EYFELVRHINLALRAHYLFKRNKDYVVTNGEVVLLDRI 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 327 TGRVMEGRRYSEGLHQALEAKENVKIQNENQTLASITFQNYFRNYPKLSGMTGTAMTEAPELKDIYNLDVVAVPTHNKVT 406
Cdd:TIGR03714 315 TGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLSVVKIPTNKPII 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 407 RLDLDDEIYGSKKEKYDAILKLIKDCYDRGQPILVGTISIEKSEELSSVLNKEKIPHKVLNAKFHEQEAFIIAQAGRFKA 486
Cdd:TIGR03714 395 RIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIAEAGQKGA 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 487 VTIATNMAGRGTDIMLGgnpemlieqldedhnyetkaaeikaqiseekKQVIEAGGLFVIGTERHESRRIDNQLRGRSGR 566
Cdd:TIGR03714 475 VTVATSMAGRGTDIKLG-------------------------------KGVAELGGLAVIGTERMENSRVDLQLRGRSGR 523
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 567 QGDPGKTKFFLSLDDDLMRIFASDRISGVLRTLGLKDGEAIHHPMISR----SLEKAQQKVEGHNYEMRKNLLRFDDVMN 642
Cdd:TIGR03714 524 QGDPGSSQFFVSLEDDLIKRWSPSWLKKYYKKYSVKDSKLKPSALFKRrfrkIVEKAQRASEDKGESAREQTNEFEESLS 603
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 643 DQRKIIYEQRTEIIKSKDshgFLNSTTEELAKKIVLTFMPVGSYREDWDIENLSVElhrVFSMKFDHNLVSKNDVTEEEI 722
Cdd:TIGR03714 604 IQRENIYAERNRLIEGSD---FLDDDVDQIIDDVFNMYAEEQDLSNKSLLKRFILE---NLSYQFKNDPDEFDLKNKEAI 677
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 723 TKIVIQTAHDIYKSKEE-AYSSELMHNAVKYILLTTLDQVWKDHLYSLDHLRQGISLRAYAQKDPLSEYKREAFNLFEQM 801
Cdd:TIGR03714 678 KDFLKEIADKELSEKKKvLNNDYLFNDFERLSILKAIDENWIEQVDYLQQLKTVVTNRQNGQRNPIFEYHKEALESYEYM 757
|
....*
gi 75536241 802 LNNLK 806
Cdd:TIGR03714 758 KKEIK 762
|
|
| SecA_DEAD |
pfam07517 |
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with ... |
5-389 |
0e+00 |
|
SecA DEAD-like domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Pssm-ID: 462190 [Multi-domain] Cd Length: 379 Bit Score: 689.23 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 5 LKKLFGTANDRTVKKLFSEITKINSLEPAIQKLSDEELKNKTVEFKEKLKNGATLDDIVYEAFAVVREAARRVCGMRHFD 84
Cdd:pfam07517 1 LKKIFGSPNERDLKRLRKIVDQINALEEELKALSDEELRAKTDELRERLREGESLDDILPEAFALVREAAKRVLGMRHYD 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 85 VQLIGGLILHRGMITEMRTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLASRDSASMGKIYNFLGLSVGCIVAGMPDEA 164
Cdd:pfam07517 81 VQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLTVGVITSDMDPEE 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 165 KRAAYNADITHATNNELGFDYLRDNMKYSLQERVLRPFNFAIIDEVDSILIDEARTPLVISGPVNDNSELYGKIDKIVRM 244
Cdd:pfam07517 161 RRAAYNADITYGTNNELGFDYLRDNMATSKEDKVQRGLNFAIVDEVDSILIDEARTPLIISGPSEDDSELYREADRLVKS 240
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 245 L-NTSDFEKDEKLKTINLTETGITHIESLLSKEHlikpdtgLYDFENLTLVHYVNQALRAHNMFTVDVDYLVREGKVMII 323
Cdd:pfam07517 241 LeEDGDYEIDEKSKNVELTEKGIEKIEKLLGIDN-------LYDPENVELLHHINQALKAHHLFKRDVDYIVRDGEVVIV 313
|
330 340 350 360 370 380
....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 75536241 324 DEFTGRVMEGRRYSEGLHQALEAKENVKIQNENQTLASITFQNYFRNYPKLSGMTGTAMTEAPELK 389
Cdd:pfam07517 314 DEFTGRVMPGRRWSDGLHQAIEAKEGVEITPESQTLASITYQNFFRLYPKLSGMTGTAKTEAEEFR 379
|
|
| secA |
PRK12898 |
preprotein translocase subunit SecA; Reviewed |
26-643 |
0e+00 |
|
preprotein translocase subunit SecA; Reviewed
Pssm-ID: 237253 [Multi-domain] Cd Length: 656 Bit Score: 667.48 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 26 KINSLEPAIQKLSDEELKNKTVEFKEKLKNGATLDD-IVYEAFAVVREAARRVCGMRHFDVQLIGGLILHRGMITEMRTG 104
Cdd:PRK12898 47 RVLAAAEALAGLSEEALRARSLALRARLRARDGFRDaLLAEAFALVREASGRVLGQRHFDVQLMGGLALLSGRLAEMQTG 126
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 105 EGKTLVATLPAYLNALTGKGVHVVTVNDYLASRDSASMGKIYNFLGLSVGCIVAGMPDEAKRAAYNADITHATNNELGFD 184
Cdd:PRK12898 127 EGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTVGCVVEDQSPDERRAAYGADITYCTNKELVFD 206
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 185 YLRD-------------------NMKYSLQERVLRPFNFAIIDEVDSILIDEARTPLVISGPVNDNSEL--YGKIDKIVR 243
Cdd:PRK12898 207 YLRDrlalgqrasdarlaleslhGRSSRSTQLLLRGLHFAIVDEADSVLIDEARTPLIISAPAKEADEAevYRQALELAA 286
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 244 MLN-TSDFEKDEKLKTINLTETGITHIESLLskEHLIKPDTGLYDFENltlvhYVNQALRAHNMFTVDVDYLVREGKVMI 322
Cdd:PRK12898 287 QLKeGEDYTIDAAEKRIELTEAGRARIAELA--ESLPPAWRGAVRREE-----LVRQALSALHLFRRDEHYIVRDGKVVI 359
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 323 IDEFTGRVMEGRRYSEGLHQALEAKENVKIQNENQTLASITFQNYFRNYPKLSGMTGTAMTEAPELKDIYNLDVVAVPTH 402
Cdd:PRK12898 360 VDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTN 439
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 403 NKVTRLDLDDEIYGSKKEKYDAILKLIKDCYDRGQPILVGTISIEKSEELSSVLNKEKIPHKVLNAKFHEQEAFIIAQAG 482
Cdd:PRK12898 440 RPSQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQDAEEAAIVARAG 519
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 483 RFKAVTIATNMAGRGTDIMLGgnpemlieqldedhnyetkaaeikaqiseekKQVIEAGGLFVIGTERHESRRIDNQLRG 562
Cdd:PRK12898 520 QRGRITVATNMAGRGTDIKLE-------------------------------PGVAARGGLHVILTERHDSARIDRQLAG 568
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 563 RSGRQGDPGKTKFFLSLDDDLMRIFASDRISGVLRTLGLkdGEAIHHPMISRSLEKAQQKVEGHNYEMRKNLLRFDDVMN 642
Cdd:PRK12898 569 RCGRQGDPGSYEAILSLEDDLLQSFLGSRGLAIRRMELL--GPRGGRALGALLLRRAQRRAERLHARARRALLHADEQLD 646
|
.
gi 75536241 643 D 643
Cdd:PRK12898 647 K 647
|
|
| SecA2_Mycobac |
TIGR04221 |
accessory Sec system translocase SecA2, Actinobacterial type; Members of this family are the ... |
7-812 |
0e+00 |
|
accessory Sec system translocase SecA2, Actinobacterial type; Members of this family are the SecA2 subunit of the Mycobacterial type of accessory secretory system. This family is quite different SecA2 of the Staph/Strep type (TIGR03714).
Pssm-ID: 275062 [Multi-domain] Cd Length: 762 Bit Score: 549.43 E-value: 0e+00
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 7 KLFGTANDRTVKKLFSEITKINSLEPAIQKLSDEELknktVEFKEKLKNGATLDDIVyEAFAVVREAARRVCGMRHFDVQ 86
Cdd:TIGR04221 7 KALGSSTERNQKRSLAIVPAAASRMKELSALDDEEL----TKAARDLVLSGEAADAA-QFLAILREAAERTLGMRPFDVQ 81
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 87 LIGGLILHRGMITEMRTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLASRDSASMGKIYNFLGLSVGCIVAGMPDEAKR 166
Cdd:TIGR04221 82 LLGALRLLAGDVIEMATGEGKTLAGAMAATGFALLGKRVHVVTVNDYLARRDAEWMGPLVDFFGLTVGWVTEDSTPDERR 161
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 167 AAYNADITHATNNELGFDYLRDNMKYSLQERVLRPFNFAIIDEVDSILIDEARTPLVISGPVNDNSELYGKIDKIVRMLN 246
Cdd:TIGR04221 162 AAYACDVTYASVNEIGFDVLRDQLVTDRADLVQPAADVALIDEADSVLVDEALVPLVLAGNEPGEAPRGRITDLVRRLRE 241
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 247 TSDFEKDEKLKTINLTETGITHIESLLSKEhlikpdtGLYDFENL-TLVHYVNQALRAHNMFTVDVDYLVREGKVMIIDE 325
Cdd:TIGR04221 242 DKHYTVDEDGRNVHLTEDGARAVEAELGID-------DLYSEEHVgTTLVQVNVALHAHALLIRDVHYIVRDGKVALIDA 314
|
330 340 350 360 370 380 390 400
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 326 FTGRVMEGRRYSEGLHQALEAKENVKIQNENQTLASITFQNYFRNYPKLSGMTGTAMTEAPELKDIYNLDVVAVPTHNKV 405
Cdd:TIGR04221 315 SRGRVAQLQRWPDGLQAAVEAKEGLEVTEGGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYDLGVSVIPPNTPN 394
|
410 420 430 440 450 460 470 480
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 406 TRLDLDDEIYGSKKEKYDAILKLIKDCYDRGQPILVGTISIEKSEELSSVLNKEKIPHKVLNAKFHEQEAFIIAQAGRFK 485
Cdd:TIGR04221 395 IRFDEADRVYATAAEKNDAIVEEIAEVHKTGQPVLVGTQDVAESEELAEALLEAGVPCNVLNAKNDAEEAAIIAEAGDIG 474
|
490 500 510 520 530 540 550 560
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 486 AVTIATNMAGRGTDIMLGGNPEmlieqldEDHNyetkaaeikaqiseekkQVIEAGGLFVIGTERHESRRIDNQLRGRSG 565
Cdd:TIGR04221 475 AVTVSTQMAGRGTDIRLGGSDE-------ADHD-----------------RVAELGGLHVIGTGRHRTARLDNQLRGRAG 530
|
570 580 590 600 610 620 630 640
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 566 RQGDPGKTKFFLSLDDDLM-RIFASDRISGVLRTLGLkdgeaIHHPMISRSLEKAQQKVEGHNYEMRKNLLRFDDVMNDQ 644
Cdd:TIGR04221 531 RQGDPGSSVFFVSLEDDVVaVGGAGETVPAQPAEDGR-----IESPRVQDFVDHAQRVAEGQLLEIHANTWRYNQLIAQQ 605
|
650 660 670 680 690 700 710 720
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 645 RKIIYEQRTEIIKSkdshgflnstteelakkivltfmpvgsyredwdienlsvelhrvfsmkfdhnlvsknDVTEEEITK 724
Cdd:TIGR04221 606 RDIIDERRETLLDT---------------------------------------------------------DTAWQELSE 628
|
730 740 750 760 770 780 790 800
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 725 IVIQTAHDIYKSKEEayssELMHNAVKYILLTTLDQVWKDHLYSLDHLRQGISLRAYAQKDPLSEYKREAFNLFEQMLNN 804
Cdd:TIGR04221 629 RAADRAAELKKEVSE----DALERAAREIMLYHLDRGWAEHLAYLDDVRESIHLRALGRETPLDEFHRMAVRAFKELAQR 704
|
....*...
gi 75536241 805 LKELFIQT 812
Cdd:TIGR04221 705 AVDKAVET 712
|
|
| DEXDc_SecA |
cd17928 |
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the ... |
41-401 |
1.78e-135 |
|
DEXD-box helicase domain of SecA; SecA is a part of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA belongs to the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350686 [Multi-domain] Cd Length: 230 Bit Score: 403.84 E-value: 1.78e-135
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 41 ELKNKTVEFKEKLKNGATLDDIVYEAFAVVREAARRVCGMRHFDVQLIGGLILHRGMITEMRTGEGKTLVATLPAYLNAL 120
Cdd:cd17928 1 ELRAKTDELRERLAKGETLDDLLPEAFALVREAARRVLGMRPFDVQLIGGLVLHEGKIAEMKTGEGKTLTATLPAYLNAL 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 121 TGKGVHVVTVNDYLASRDSASMGKIYNFLGLSVGCIVAGMPDEAKRAAYNADITHATNNELGFDYLRDNMKYSLQERVLR 200
Cdd:cd17928 81 TGKGVHVVTVNDYLARRDAEWMGPLYEFLGLTVGVILSDMSPDERREAYAADITYGTNNELGFDYLRDNMVTSKEDLVQR 160
|
170 180 190 200 210 220 230 240
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 201 PFNFAIIDEVDSILIDEARTPLVISGpvndnselygkidkivrmlntsdfekdeklktinltetgithiesllskehlik 280
Cdd:cd17928 161 GLNFAIVDEVDSILIDEARTPLIISG------------------------------------------------------ 186
|
250 260 270 280 290 300 310 320
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 281 pdtglydfenltlvhyvnqalrahnmftvdvdylvregkvmiideftgrvmegrryseglhqaleakenvkiqnenqTLA 360
Cdd:cd17928 187 -----------------------------------------------------------------------------TLA 189
|
330 340 350 360
....*....|....*....|....*....|....*....|.
gi 75536241 361 SITFQNYFRNYPKLSGMTGTAMTEAPELKDIYNLDVVAVPT 401
Cdd:cd17928 190 TITFQNYFRLYPKLAGMTGTAKTEAEEFREIYNLDVVVIPT 230
|
|
| SecA_SW |
pfam07516 |
SecA Wing and Scaffold domain; SecA protein binds to the plasma membrane where it interacts ... |
606-817 |
1.51e-83 |
|
SecA Wing and Scaffold domain; SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This family is composed of two C-terminal alpha helical subdomains: the wing and scaffold subdomains.
Pssm-ID: 462189 [Multi-domain] Cd Length: 213 Bit Score: 267.05 E-value: 1.51e-83
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 606 AIHHPMISRSLEKAQQKVEGHNYEMRKNLLRFDDVMNDQRKIIYEQRTEIIKSKDSHGFLNSTTEELAKKIVLTFMPVGS 685
Cdd:pfam07516 1 PIEHKMVSKAIENAQKKVEGRNFDIRKNLLEYDDVMNQQREVIYAQRREILEGEDLKEDILEMIEDVVDDIVDEYIPPEE 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 686 YREDWDIENLSVELHRVFSMKFDHNLVSK-NDVTEEEITKIVIQTAHDIYKSKEEAYSSELMHNAVKYILLTTLDQVWKD 764
Cdd:pfam07516 81 SPEEWDLEGLKEALNEIFGLELPISEWEEeEDLDKEELKERLLEAAEEAYEEKEEEIGPELMRELERVVLLQVIDSKWKE 160
|
170 180 190 200 210
....*....|....*....|....*....|....*....|....*....|...
gi 75536241 765 HLYSLDHLRQGISLRAYAQKDPLSEYKREAFNLFEQMLNNLKELFIQTVYHFH 817
Cdd:pfam07516 161 HLDAMDQLRQGIGLRAYGQKDPLVEYKREGFELFEEMLDAIREEVVRYLFRVQ 213
|
|
| SF2_C_secA |
cd18803 |
C-terminal helicase domain of the protein translocase subunit secA; SecA is a component of the ... |
407-578 |
6.73e-80 |
|
C-terminal helicase domain of the protein translocase subunit secA; SecA is a component of the Sec translocase that transports the vast majority of bacterial and ER-exported proteins. SecA binds both the signal sequence and the mature domain of the preprotein emerging from the ribosome. SecA is a DEAD-like helicase belonging to superfamily (SF)2, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. Similar to SF1 helicases, SF2 helicases do not form toroidal structures like SF3-6 helicases. Their helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350190 [Multi-domain] Cd Length: 141 Bit Score: 254.78 E-value: 6.73e-80
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 407 RLDLDDEIYGSKKEKYDAILKLIKDCYDRGQPILVGTISIEKSEELSSVLNKEKIPHKVLNAKFHEQEAFIIAQAGRFKA 486
Cdd:cd18803 1 RKDLPDLVYKTEEEKWKAIVEEVKELHAKGQPVLVGTRSVEKSELLSALLKEEGIPHNVLNAKNHAREAEIIAEAGQKGA 80
|
90 100 110 120 130 140 150 160
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 487 VTIATNMAGRGTDIMLGGNPEmlieqldedhnyetkaaeikaqiseekkqviEAGGLFVIGTERHESRRIDNQLRGRSGR 566
Cdd:cd18803 81 VTIATNMAGRGTDIKLGGNVE-------------------------------ELGGLHVIGTERHESRRIDNQLRGRAGR 129
|
170
....*....|..
gi 75536241 567 QGDPGKTKFFLS 578
Cdd:cd18803 130 QGDPGSSRFYLS 141
|
|
| SecA_PP_bind |
smart00958 |
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and ... |
227-345 |
1.60e-53 |
|
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain.
Pssm-ID: 214938 [Multi-domain] Cd Length: 114 Bit Score: 181.50 E-value: 1.60e-53
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 227 PVNDNSELYGKIDKIVRML--NTSDFEKDEKLKTINLTETGITHIESLLSKEhlikpdtGLYDFENLTLVHYVNQALRAH 304
Cdd:smart00958 1 PAEDSSELYKRADELVPTLkkDEEDYEVDEKSRQVALTEEGIEKAEKLLGID-------NLYDPENIELVHHVNQALRAH 73
|
90 100 110 120
....*....|....*....|....*....|....*....|.
gi 75536241 305 NMFTVDVDYLVREGKVMIIDEFTGRVMEGRRYSEGLHQALE 345
Cdd:smart00958 74 KLFKRDVDYIVRDGEVVIVDEFTGRVMPGRRWSDGLHQAIE 114
|
|
| SecA_PP_bind |
pfam01043 |
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and ... |
230-345 |
1.96e-50 |
|
SecA preprotein cross-linking domain; The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain.
Pssm-ID: 460039 [Multi-domain] Cd Length: 110 Bit Score: 172.60 E-value: 1.96e-50
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 230 DNSELYGKIDKIVRMLN-TSDFEKDEKLKTINLTETGITHIESLLSKEHLikpdtglYDFENLTLVHYVNQALRAHNMFT 308
Cdd:pfam01043 1 KSTELYRQADKFVKQLKeDEDYEVDEKAKTVELTEEGIEKAEKLLGIDNL-------YDPENIELVHHINQALKAHHLFK 73
|
90 100 110
....*....|....*....|....*....|....*..
gi 75536241 309 VDVDYLVREGKVMIIDEFTGRVMEGRRYSEGLHQALE 345
Cdd:pfam01043 74 RDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIE 110
|
|
| SF2-N |
cd00046 |
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily ... |
100-223 |
4.32e-15 |
|
N-terminal DEAD/H-box helicase domain of superfamily 2 helicases; The DEAD/H-like superfamily 2 helicases comprise a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This N-terminal domain contains the ATP-binding region.
Pssm-ID: 350668 [Multi-domain] Cd Length: 146 Bit Score: 73.21 E-value: 4.32e-15
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 100 EMRTGEGKTLVATLPAYLNALT-GKGVHVVTVNDYLASRDSASMGKIYnFLGLSVGCIVAGMPDE--AKRAAYNADITHA 176
Cdd:cd00046 7 TAPTGSGKTLAALLAALLLLLKkGKKVLVLVPTKALALQTAERLRELF-GPGIRVAVLVGGSSAEerEKNKLGDADIIIA 85
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 75536241 177 TNNELGFDYLRDnmkyslQERVLRPFNFAIIDEVDSILIDEARTPLV 223
Cdd:cd00046 86 TPDMLLNLLLRE------DRLFLKDLKLIIVDEAHALLIDSRGALIL 126
|
|
| SEC-C |
pfam02810 |
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of ... |
886-903 |
3.72e-09 |
|
SEC-C motif; The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.
Pssm-ID: 460704 [Multi-domain] Cd Length: 19 Bit Score: 52.48 E-value: 3.72e-09
|
| YecA |
COG3318 |
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C ... |
883-905 |
4.66e-09 |
|
Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C motif [Function unknown];
Pssm-ID: 442547 [Multi-domain] Cd Length: 45 Bit Score: 52.60 E-value: 4.66e-09
10 20
....*....|....*....|...
gi 75536241 883 RVSRNELCPCGSGKKYKYCHGAN 905
Cdd:COG3318 23 KVGRNDPCPCGSGKKYKKCCGAN 45
|
|
| DEAD-like_helicase_N |
cd17912 |
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase ... |
96-140 |
1.82e-08 |
|
N-terminal helicase domain of the DEAD-box helicase superfamily; The DEAD-like helicase superfamily is a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. The N-terminal domain contains the ATP-binding region.
Pssm-ID: 350670 [Multi-domain] Cd Length: 81 Bit Score: 52.14 E-value: 1.82e-08
10 20 30 40
....*....|....*....|....*....|....*....|....*
gi 75536241 96 GMITEMRTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLASRDSA 140
Cdd:cd17912 1 NILHLGPTGSGKTLVAIQKIASAMSSGKSVLVVTPTKLLAHEILI 45
|
|
| DEAD-like_helicase_C |
cd09300 |
C-terminal helicase domain of the DEAD-like helicases; This hierarchy of DEAD-like helicases ... |
541-576 |
2.36e-07 |
|
C-terminal helicase domain of the DEAD-like helicases; This hierarchy of DEAD-like helicases is composed of two superfamilies, SF1 and SF2, that share almost identical folds and extensive structural similarity in their catalytic core. Helicases are involved in ATP-dependent RNA or DNA unwinding. Two distinct types of helicases exist, those forming toroidal, predominantly hexameric structures, and those that do not. SF1 and SF2 helicases do not form toroidal structures, while SF3-6 helicases do. Their conserved helicase core consists of two similar protein domains that resemble the fold of the recombination protein RecA. This model describes the C-terminal domain, also called HelicC.
Pssm-ID: 350171 [Multi-domain] Cd Length: 59 Bit Score: 48.31 E-value: 2.36e-07
10 20 30
....*....|....*....|....*....|....*.
gi 75536241 541 GGLFVIGTERHESRRIDNQLRGRSGRQGDPGKTKFF 576
Cdd:cd09300 23 ELNTIIVDKNLRSYRGLNQAFGRANRIYTFGGIVTY 58
|
|
| PRK05590 |
PRK05590 |
hypothetical protein; Provisional |
883-905 |
1.18e-06 |
|
hypothetical protein; Provisional
Pssm-ID: 235521 Cd Length: 166 Bit Score: 49.58 E-value: 1.18e-06
10 20
....*....|....*....|...
gi 75536241 883 RVSRNELCPCGSGKKYKYCHGAN 905
Cdd:PRK05590 144 KVGRNDPCPCGSGKKYKKCCGKN 166
|
|
| SWIM_PBPRA1643 |
TIGR04102 |
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have ... |
885-903 |
3.98e-05 |
|
SWIM/SEC-C metal-binding motif protein, PBPRA1643 family; Members of this protein family have a SWIM, or SEC-C, domain (see pfam02810), a 21-amino acid putative Zn-binding domain that is shared with SecA, plant MuDR transposases, etc. This small protein family of unknown function occurs primarily in marine bacteria.
Pssm-ID: 200353 [Multi-domain] Cd Length: 108 Bit Score: 43.45 E-value: 3.98e-05
|
| PRK01617 |
PRK01617 |
hypothetical protein; Provisional |
884-903 |
4.36e-05 |
|
hypothetical protein; Provisional
Pssm-ID: 234966 Cd Length: 154 Bit Score: 44.64 E-value: 4.36e-05
|
| DEAD |
pfam00270 |
DEAD/DEAH box helicase; Members of this family include the DEAD and DEAH box helicases. ... |
95-214 |
8.79e-04 |
|
DEAD/DEAH box helicase; Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Pssm-ID: 425570 [Multi-domain] Cd Length: 165 Bit Score: 41.07 E-value: 8.79e-04
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 95 RGMITEMRTGEGKTLVATLPAyLNALTGKGVHVVTVndYLA-SRDSA-----SMGKIYNFLGLSVGCIVAGMPDEAKRAA 168
Cdd:pfam00270 15 RDVLVQAPTGSGKTLAFLLPA-LEALDKLDNGPQAL--VLApTRELAeqiyeELKKLGKGLGLKVASLLGGDSRKEQLEK 91
|
90 100 110 120
....*....|....*....|....*....|....*....|....*..
gi 75536241 169 Y-NADITHATnnelgFDYLRDNMKyslQERVLRPFNFAIIDEVDSIL 214
Cdd:pfam00270 92 LkGPDILVGT-----PGRLLDLLQ---ERKLLKNLKLLVLDEAHRLL 130
|
|
| DEXHc_Ski2 |
cd17921 |
DEXH-box helicase domain of DEAD-like helicase Ski2 family proteins; Ski2-like RNA helicases ... |
94-223 |
1.72e-03 |
|
DEXH-box helicase domain of DEAD-like helicase Ski2 family proteins; Ski2-like RNA helicases play an important role in RNA degradation, processing, and splicing pathways. They belong to the type II DEAD box helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Pssm-ID: 350679 [Multi-domain] Cd Length: 181 Bit Score: 40.32 E-value: 1.72e-03
10 20 30 40 50 60 70 80
....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 75536241 94 HRGMITEMRTGEGKTLVATLPAYLNALTGKGVHVVTV-NDYLASRDSASMGKIYNFLGLSVGcIVAGMPDEAKRAAYNAD 172
Cdd:cd17921 17 GDSVLVSAPTSSGKTLIAELAILRALATSGGKAVYIApTRALVNQKEADLRERFGPLGKNVG-LLTGDPSVNKLLLAEAD 95
|
90 100 110 120 130
....*....|....*....|....*....|....*....|....*....|.
gi 75536241 173 ITHATNNELgfdylrDNMKYSLQERVLRPFNFAIIDEVDSIlIDEARTPLV 223
Cdd:cd17921 96 ILVATPEKL------DLLLRNGGERLIQDVRLVVVDEAHLI-GDGERGVVL 139
|
|
| PRK10396 |
PRK10396 |
hypothetical protein; Provisional |
882-901 |
4.32e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 236680 [Multi-domain] Cd Length: 221 Bit Score: 39.73 E-value: 4.32e-03
|
| PRK00183 |
PRK00183 |
hypothetical protein; Provisional |
877-901 |
4.43e-03 |
|
hypothetical protein; Provisional
Pssm-ID: 166842 Cd Length: 157 Bit Score: 38.63 E-value: 4.43e-03
10 20
....*....|....*....|....*
gi 75536241 877 DPTSWGRVSRNELCPCGSGKKYKYC 901
Cdd:PRK00183 127 DPTVPLKAGRNDPCPCGSGQKFKKC 151
|
|
| |
